Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGCS2P54868 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.43■■■□□ 2.62
HMGCS2P54868 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
HMGCS2P54868 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGCS2P54868 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
HMGCS2P54868 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.41■■■□□ 2.62
HMGCS2P54868 AC108673.1-201ENST00000510422 1159 ntBASIC31.4■■■□□ 2.62
HMGCS2P54868 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.4■■■□□ 2.62
HMGCS2P54868 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
HMGCS2P54868 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
HMGCS2P54868 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.38■■■□□ 2.61
HMGCS2P54868 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
HMGCS2P54868 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
HMGCS2P54868 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
HMGCS2P54868 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
HMGCS2P54868 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
HMGCS2P54868 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
HMGCS2P54868 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
HMGCS2P54868 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.34■■■□□ 2.61
HMGCS2P54868 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.34■■■□□ 2.61
HMGCS2P54868 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGCS2P54868 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGCS2P54868 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HMGCS2P54868 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.33■■■□□ 2.61
HMGCS2P54868 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGCS2P54868 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGCS2P54868 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.32■■■□□ 2.6
HMGCS2P54868 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.32■■■□□ 2.6
HMGCS2P54868 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
HMGCS2P54868 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.31■■■□□ 2.6
HMGCS2P54868 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGCS2P54868 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGCS2P54868 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGCS2P54868 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.3■■■□□ 2.6
HMGCS2P54868 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
HMGCS2P54868 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
HMGCS2P54868 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.28■■■□□ 2.6
HMGCS2P54868 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGCS2P54868 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
HMGCS2P54868 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.26■■■□□ 2.59
HMGCS2P54868 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.26■■■□□ 2.59
HMGCS2P54868 MIR4449-201ENST00000578365 66 ntBASIC31.26■■■□□ 2.59
HMGCS2P54868 MIR639-201ENST00000384974 98 ntBASIC31.25■■■□□ 2.59
HMGCS2P54868 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGCS2P54868 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGCS2P54868 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.23■■■□□ 2.59
HMGCS2P54868 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
HMGCS2P54868 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
HMGCS2P54868 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
HMGCS2P54868 MIR3648-2-201ENST00000581792 180 ntBASIC31.2■■■□□ 2.59
HMGCS2P54868 AC016575.1-201ENST00000607026 382 ntBASIC31.2■■■□□ 2.59
HMGCS2P54868 MIR3648-1-201ENST00000615959 180 ntBASIC31.2■■■□□ 2.59
HMGCS2P54868 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
HMGCS2P54868 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
HMGCS2P54868 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
HMGCS2P54868 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
HMGCS2P54868 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.18■■■□□ 2.58
HMGCS2P54868 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
HMGCS2P54868 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
HMGCS2P54868 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HMGCS2P54868 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.16■■■□□ 2.58
HMGCS2P54868 DUX4L11-201ENST00000611504 1267 ntBASIC31.15■■■□□ 2.58
HMGCS2P54868 DUX4L12-201ENST00000614593 1267 ntBASIC31.15■■■□□ 2.58
HMGCS2P54868 DUX4L14-201ENST00000621227 1267 ntBASIC31.15■■■□□ 2.58
HMGCS2P54868 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.14■■■□□ 2.58
HMGCS2P54868 LINC01971-201ENST00000617888 1048 ntBASIC31.14■■■□□ 2.58
HMGCS2P54868 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
HMGCS2P54868 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.13■■■□□ 2.57
HMGCS2P54868 CR559946.2-201ENST00000623684 991 ntBASIC31.11■■■□□ 2.57
HMGCS2P54868 AC120057.4-201ENST00000624722 1615 ntBASIC31.11■■■□□ 2.57
HMGCS2P54868 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.1■■■□□ 2.57
HMGCS2P54868 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
HMGCS2P54868 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.09■■■□□ 2.57
HMGCS2P54868 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.07■■■□□ 2.56
HMGCS2P54868 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.07■■■□□ 2.56
HMGCS2P54868 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
HMGCS2P54868 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
HMGCS2P54868 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.05■■■□□ 2.56
HMGCS2P54868 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.05■■■□□ 2.56
HMGCS2P54868 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
HMGCS2P54868 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HMGCS2P54868 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.04■■■□□ 2.56
HMGCS2P54868 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.04■■■□□ 2.56
HMGCS2P54868 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
HMGCS2P54868 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGCS2P54868 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGCS2P54868 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.03■■■□□ 2.56
HMGCS2P54868 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
HMGCS2P54868 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
HMGCS2P54868 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
HMGCS2P54868 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.56
HMGCS2P54868 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HMGCS2P54868 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31■■■□□ 2.55
HMGCS2P54868 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.99■■■□□ 2.55
HMGCS2P54868 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.98■■■□□ 2.55
HMGCS2P54868 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
HMGCS2P54868 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
HMGCS2P54868 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
HMGCS2P54868 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
HMGCS2P54868 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms