Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	YJL118W	YJL118W	660 nt		10.28	□□□□□ -0.76
SHP1	P34223	SNF1	YDR477W	1902 nt		10.28	□□□□□ -0.76
SHP1	P34223	HXT1	YHR094C	1713 nt		10.27	□□□□□ -0.76
SHP1	P34223	PAU19	YMR325W	375 nt		10.24	□□□□□ -0.77
SHP1	P34223	SSN3	YPL042C	1668 nt		10.23	□□□□□ -0.77
SHP1	P34223	TOA2	YKL058W	369 nt		10.23	□□□□□ -0.77
SHP1	P34223	SNZ1	YMR096W	894 nt		10.23	□□□□□ -0.77
SHP1	P34223	THI72	YOR192C	1800 nt		10.22	□□□□□ -0.77
SHP1	P34223	LSB5	YCL034W	1065 nt		10.22	□□□□□ -0.77
SHP1	P34223	HIF1	YLL022C	1158 nt		10.21	□□□□□ -0.77
SHP1	P34223	UFO1	YML088W	2007 nt		10.2	□□□□□ -0.78
SHP1	P34223	PHO23	YNL097C	993 nt		10.2	□□□□□ -0.78
SHP1	P34223	BNI5	YNL166C	1347 nt		10.2	□□□□□ -0.78
SHP1	P34223	RPT5	YOR117W	1305 nt		10.19	□□□□□ -0.78
SHP1	P34223	GND2	YGR256W	1479 nt		10.18	□□□□□ -0.78
SHP1	P34223	TRT2	tT(CGU)K	72 nt		10.17	□□□□□ -0.78
SHP1	P34223	MSC1	YML128C	1542 nt		10.17	□□□□□ -0.78
SHP1	P34223	SHY1	YGR112W	1170 nt		10.16	□□□□□ -0.78
SHP1	P34223	TAF13	YML098W	504 nt		10.16	□□□□□ -0.78
SHP1	P34223	SLG1	YOR008C	1137 nt		10.16	□□□□□ -0.78
SHP1	P34223	YMR262W	YMR262W	942 nt		10.15	□□□□□ -0.78
SHP1	P34223	NUC1	YJL208C	990 nt		10.14	□□□□□ -0.79
SHP1	P34223	YPR126C	YPR126C	309 nt		10.13	□□□□□ -0.79
SHP1	P34223	RIB7	YBR153W	735 nt		10.13	□□□□□ -0.79
SHP1	P34223	TIM44	YIL022W	1296 nt		10.1	□□□□□ -0.79
SHP1	P34223	BOR1	YNL275W	1731 nt		10.1	□□□□□ -0.79
SHP1	P34223	TPS1	YBR126C	1488 nt		10.09	□□□□□ -0.79
SHP1	P34223	MHF1	YOL086W-A	273 nt		10.08	□□□□□ -0.8
SHP1	P34223	FUB1	YCR076C	753 nt		10.07	□□□□□ -0.8
SHP1	P34223	OXA1	YER154W	1209 nt		10.07	□□□□□ -0.8
SHP1	P34223	APS2	YJR058C	444 nt		10.07	□□□□□ -0.8
SHP1	P34223	YJR114W	YJR114W	393 nt		10.07	□□□□□ -0.8
SHP1	P34223	TUB4	YLR212C	1422 nt		10.07	□□□□□ -0.8
SHP1	P34223	SEC61	YLR378C	1443 nt		10.07	□□□□□ -0.8
SHP1	P34223	PAR32	YDL173W	888 nt		10.06	□□□□□ -0.8
SHP1	P34223	CTI6	YPL181W	1521 nt		10.06	□□□□□ -0.8
SHP1	P34223	DAK2	YFL053W	1776 nt		10.06	□□□□□ -0.8
SHP1	P34223	POT1	YIL160C	1254 nt		10.05	□□□□□ -0.8
SHP1	P34223	URA6	YKL024C	615 nt		10.05	□□□□□ -0.8
SHP1	P34223	OYE3	YPL171C	1203 nt		10.05	□□□□□ -0.8
SHP1	P34223	TIP1	YBR067C	633 nt		10.05	□□□□□ -0.8
SHP1	P34223	BIO5	YNR056C	1686 nt		10.04	□□□□□ -0.8
SHP1	P34223	GSF2	YML048W	1212 nt		10.04	□□□□□ -0.8
SHP1	P34223	OYE2	YHR179W	1203 nt		10.03	□□□□□ -0.8
SHP1	P34223	RDN37-1	RDN37-1	5354 nt		10.02	□□□□□ -0.8
SHP1	P34223	RDN37-2	RDN37-2	5354 nt		10.02	□□□□□ -0.8
SHP1	P34223	NIF3	YGL221C	867 nt		10.02	□□□□□ -0.81
SHP1	P34223	EAF3	YPR023C	1206 nt		10.02	□□□□□ -0.81
SHP1	P34223	RAS2	YNL098C	969 nt		10.01	□□□□□ -0.81
SHP1	P34223	FLR1	YBR008C	1647 nt		10	□□□□□ -0.81
SHP1	P34223	SAM2	YDR502C	1155 nt		10	□□□□□ -0.81
SHP1	P34223	YER188W	YER188W	720 nt		10	□□□□□ -0.81
SHP1	P34223	IML3	YBR107C	738 nt		9.97	□□□□□ -0.81
SHP1	P34223	DLD2	YDL178W	1593 nt		9.97	□□□□□ -0.81
SHP1	P34223	TMA23	YMR269W	636 nt		9.96	□□□□□ -0.82
SHP1	P34223	PET8	YNL003C	855 nt		9.95	□□□□□ -0.82
SHP1	P34223	ZRT3	YKL175W	1512 nt		9.93	□□□□□ -0.82
SHP1	P34223	RIB1	YBL033C	1038 nt		9.93	□□□□□ -0.82
SHP1	P34223	DDI1	YER143W	1287 nt		9.92	□□□□□ -0.82
SHP1	P34223	ERG6	YML008C	1152 nt		9.92	□□□□□ -0.82
SHP1	P34223	CDD1	YLR245C	429 nt		9.91	□□□□□ -0.82
SHP1	P34223	YNL024C	YNL024C	741 nt		9.9	□□□□□ -0.82
SHP1	P34223	YPS3	YLR121C	1527 nt		9.9	□□□□□ -0.82
SHP1	P34223	FMS1	YMR020W	1527 nt		9.9	□□□□□ -0.82
SHP1	P34223	HEM13	YDR044W	987 nt		9.89	□□□□□ -0.83
SHP1	P34223	RSC8	YFR037C	1674 nt		9.88	□□□□□ -0.83
SHP1	P34223	IGD1	YFR017C	588 nt		9.88	□□□□□ -0.83
SHP1	P34223	IMO32	YGR031W	1029 nt		9.88	□□□□□ -0.83
SHP1	P34223	YIA6	YIL006W	1122 nt		9.87	□□□□□ -0.83
SHP1	P34223	OSH7	YHR001W	1314 nt		9.86	□□□□□ -0.83
SHP1	P34223	YJL067W	YJL067W	351 nt		9.86	□□□□□ -0.83
SHP1	P34223	TAT2	YOL020W	1779 nt		9.86	□□□□□ -0.83
SHP1	P34223	MCH5	YOR306C	1566 nt		9.85	□□□□□ -0.83
SHP1	P34223	SOL2	YCR073W-A	948 nt		9.85	□□□□□ -0.83
SHP1	P34223	YFR036W-A	YFR036W-A	651 nt		9.85	□□□□□ -0.83
SHP1	P34223	SOD2	YHR008C	702 nt		9.85	□□□□□ -0.83
SHP1	P34223	YDR455C	YDR455C	309 nt		9.84	□□□□□ -0.83
SHP1	P34223	LSM5	YER146W	282 nt		9.84	□□□□□ -0.83
SHP1	P34223	SPS100	YHR139C	981 nt		9.84	□□□□□ -0.83
SHP1	P34223	NAS2	YIL007C	663 nt		9.84	□□□□□ -0.83
SHP1	P34223	YCP4	YCR004C	744 nt		9.82	□□□□□ -0.84
SHP1	P34223	SAM50	YNL026W	1455 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)D	tA(AGC)D	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)F	tA(AGC)F	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)G	tA(AGC)G	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)H	tA(AGC)H	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)J	tA(AGC)J	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)K1	tA(AGC)K1	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)K2	tA(AGC)K2	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)L	tA(AGC)L	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)M1	tA(AGC)M1	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)M2	tA(AGC)M2	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	tA(AGC)P	tA(AGC)P	73 nt		9.8	□□□□□ -0.84
SHP1	P34223	SPP2	YOR148C	558 nt		9.8	□□□□□ -0.84
SHP1	P34223	PBP1	YGR178C	2169 nt		9.8	□□□□□ -0.84
SHP1	P34223	ACH1	YBL015W	1581 nt		9.8	□□□□□ -0.84
SHP1	P34223	ALG12	YNR030W	1656 nt		9.79	□□□□□ -0.84
SHP1	P34223	RDN25-1	RDN25-1	3396 nt		9.78	□□□□□ -0.84
SHP1	P34223	RDN25-2	RDN25-2	3396 nt		9.78	□□□□□ -0.84
SHP1	P34223	IPL1	YPL209C	1104 nt		9.78	□□□□□ -0.84

Retrieved 100 of 7,029 protein–RNA pairs in 22.6 ms