Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
RB1P06400 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
RB1P06400 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RB1P06400 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.9■■■□□ 2.22
RB1P06400 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.9■■■□□ 2.22
RB1P06400 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RB1P06400 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RB1P06400 LINC01971-201ENST00000617888 1048 ntBASIC28.89■■■□□ 2.22
RB1P06400 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.21
RB1P06400 DUX4L11-201ENST00000611504 1267 ntBASIC28.88■■■□□ 2.21
RB1P06400 DUX4L12-201ENST00000614593 1267 ntBASIC28.88■■■□□ 2.21
RB1P06400 DUX4L14-201ENST00000621227 1267 ntBASIC28.88■■■□□ 2.21
RB1P06400 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
RB1P06400 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
RB1P06400 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
RB1P06400 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.86■■■□□ 2.21
RB1P06400 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.85■■■□□ 2.21
RB1P06400 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.85■■■□□ 2.21
RB1P06400 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.85■■■□□ 2.21
RB1P06400 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
RB1P06400 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
RB1P06400 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
RB1P06400 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.84■■■□□ 2.21
RB1P06400 HSD17B1P1-201ENST00000590052 955 ntBASIC28.84■■■□□ 2.21
RB1P06400 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.84■■■□□ 2.21
RB1P06400 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.83■■■□□ 2.21
RB1P06400 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
RB1P06400 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
RB1P06400 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
RB1P06400 CR559946.2-201ENST00000623684 991 ntBASIC28.81■■■□□ 2.2
RB1P06400 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.8■■■□□ 2.2
RB1P06400 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RB1P06400 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
RB1P06400 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RB1P06400 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
RB1P06400 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RB1P06400 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.77■■■□□ 2.2
RB1P06400 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.77■■■□□ 2.2
RB1P06400 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
RB1P06400 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
RB1P06400 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
RB1P06400 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.75■■■□□ 2.19
RB1P06400 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
RB1P06400 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
RB1P06400 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC28.73■■■□□ 2.19
RB1P06400 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC28.73■■■□□ 2.19
RB1P06400 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.73■■■□□ 2.19
RB1P06400 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RB1P06400 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC28.72■■■□□ 2.19
RB1P06400 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.72■■■□□ 2.19
RB1P06400 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RB1P06400 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
RB1P06400 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
RB1P06400 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RB1P06400 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
RB1P06400 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.69■■■□□ 2.18
RB1P06400 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.69■■■□□ 2.18
RB1P06400 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RB1P06400 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RB1P06400 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.67■■■□□ 2.18
RB1P06400 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RB1P06400 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.65■■■□□ 2.18
RB1P06400 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RB1P06400 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.62■■■□□ 2.17
RB1P06400 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RB1P06400 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RB1P06400 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.61■■■□□ 2.17
RB1P06400 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RB1P06400 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.59■■■□□ 2.17
RB1P06400 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RB1P06400 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.58■■■□□ 2.17
RB1P06400 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
RB1P06400 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
RB1P06400 DUX4L13-201ENST00000554103 1267 ntBASIC28.57■■■□□ 2.16
RB1P06400 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
RB1P06400 DUX4L15-201ENST00000611059 1267 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L23-201ENST00000615195 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L24-201ENST00000617576 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L22-201ENST00000618238 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L20-201ENST00000619712 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L21-201ENST00000622058 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L10-201ENST00000622460 1267 ntBASIC28.57■■■□□ 2.16
RB1P06400 DUX4L25-201ENST00000624915 1269 ntBASIC28.57■■■□□ 2.16
RB1P06400 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
RB1P06400 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
RB1P06400 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
RB1P06400 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
RB1P06400 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
RB1P06400 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
RB1P06400 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
RB1P06400 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
RB1P06400 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
RB1P06400 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
RB1P06400 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.53■■■□□ 2.16
RB1P06400 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.52■■■□□ 2.16
RB1P06400 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.52■■■□□ 2.16
RB1P06400 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.5■■■□□ 2.15
RB1P06400 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RB1P06400 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
RB1P06400 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms