Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 GUK1-205ENST00000366722 850 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 NME4-202ENST00000382940 766 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 AL354811.1-201ENST00000610286 706 ntBASIC16.97■□□□□ 0.31
FOXA2Q9Y261 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 NME4-211ENST00000620944 1193 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 AL358852.1-201ENST00000623174 1268 ntBASIC16.97■□□□□ 0.31
FOXA2Q9Y261 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA2Q9Y261 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA2Q9Y261 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA2Q9Y261 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA2Q9Y261 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 ZNRF2P3-201ENST00000424200 374 ntBASIC16.95■□□□□ 0.3
FOXA2Q9Y261 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 AC012414.1-201ENST00000556676 535 ntBASIC16.95■□□□□ 0.3
FOXA2Q9Y261 SMUG1P1-201ENST00000590640 811 ntBASIC16.95■□□□□ 0.3
FOXA2Q9Y261 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA2Q9Y261 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 LINC01521-201ENST00000504184 1943 ntBASIC16.94■□□□□ 0.3
FOXA2Q9Y261 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA2Q9Y261 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms