Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4E1Q9UPM8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 AC097381.1-201ENST00000429019 1296 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L2-201ENST00000561772 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 AC138907.5-202ENST00000569484 235 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L6-201ENST00000626483 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L1-201ENST00000627662 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L8-201ENST00000629013 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L3-201ENST00000630187 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L7-201ENST00000630678 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 DUX4L5-201ENST00000630834 1275 ntBASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
AP4E1Q9UPM8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 AC104187.1-201ENST00000607510 612 ntBASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4E1Q9UPM8 AC061975.6-201ENST00000579045 1553 ntBASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 MIR6821-201ENST00000617625 74 ntBASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 AC004854.2-201ENST00000608450 1441 ntBASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.78■■□□□ 1.08
AP4E1Q9UPM8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 AC087623.3-201ENST00000607047 1098 ntBASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4E1Q9UPM8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.07
AP4E1Q9UPM8 AP004607.4-201ENST00000530158 1459 ntBASIC21.77■■□□□ 1.07
AP4E1Q9UPM8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms