Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28BQ9BUN5 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 UNC93B8-201ENST00000511903 705 ntBASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 AC010525.1-201ENST00000585559 441 ntBASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28BQ9BUN5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.39■□□□□ 0.86
CCDC28BQ9BUN5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28BQ9BUN5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28BQ9BUN5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.39■□□□□ 0.86
CCDC28BQ9BUN5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28BQ9BUN5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 AC073314.1-201ENST00000568729 2216 ntBASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 PLK5-205ENST00000642079 1969 ntBASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28BQ9BUN5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28BQ9BUN5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 AL020996.1-203ENST00000536896 2307 ntBASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 AP006587.3-201ENST00000525742 1516 ntBASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC28BQ9BUN5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms