Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087239.1-201ENST00000622671 572 ntBASIC18.27■□□□□ 0.52
NKX3-1Q99801 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NKX3-1Q99801 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX3-1Q99801 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.27■□□□□ 0.51
NKX3-1Q99801 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX3-1Q99801 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX3-1Q99801 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NKX3-1Q99801 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX3-1Q99801 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX3-1Q99801 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 AC019069.1-201ENST00000610008 1333 ntBASIC18.26■□□□□ 0.51
NKX3-1Q99801 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX3-1Q99801 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 LINC01521-201ENST00000504184 1943 ntBASIC18.26■□□□□ 0.51
NKX3-1Q99801 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 SLC47A1P1-202ENST00000449666 945 ntBASIC18.26■□□□□ 0.51
NKX3-1Q99801 AC068587.7-201ENST00000641602 218 ntBASIC18.26■□□□□ 0.51
NKX3-1Q99801 AL049796.1-201ENST00000565336 1766 ntBASIC18.26■□□□□ 0.51
NKX3-1Q99801 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NKX3-1Q99801 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX3-1Q99801 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
NKX3-1Q99801 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.25■□□□□ 0.51
NKX3-1Q99801 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX3-1Q99801 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX3-1Q99801 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
NKX3-1Q99801 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX3-1Q99801 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX3-1Q99801 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX3-1Q99801 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX3-1Q99801 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX3-1Q99801 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX3-1Q99801 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 FEM1AP1-201ENST00000431297 1995 ntBASIC18.24■□□□□ 0.51
NKX3-1Q99801 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
NKX3-1Q99801 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NKX3-1Q99801 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 SYT6-210ENST00000641643 1587 ntBASIC18.23■□□□□ 0.51
NKX3-1Q99801 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 AC096631.2-201ENST00000436136 790 ntBASIC18.23■□□□□ 0.51
NKX3-1Q99801 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
NKX3-1Q99801 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.23■□□□□ 0.51
NKX3-1Q99801 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.23■□□□□ 0.51
NKX3-1Q99801 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX3-1Q99801 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX3-1Q99801 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
NKX3-1Q99801 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.22■□□□□ 0.51
NKX3-1Q99801 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX3-1Q99801 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX3-1Q99801 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms