Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 AC145285.6-201ENST00000604632 637 ntBASIC21.04■□□□□ 0.96
VPS13AQ96RL7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS13AQ96RL7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.02■□□□□ 0.96
VPS13AQ96RL7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 AP006587.3-201ENST00000525742 1516 ntBASIC21.02■□□□□ 0.96
VPS13AQ96RL7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
VPS13AQ96RL7 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
VPS13AQ96RL7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS13AQ96RL7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS13AQ96RL7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AL353708.3-201ENST00000610272 989 ntBASIC21.01■□□□□ 0.95
VPS13AQ96RL7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AC092368.3-202ENST00000574180 1591 ntBASIC21.01■□□□□ 0.95
VPS13AQ96RL7 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 KRT17P3-201ENST00000420566 1262 ntBASIC21.01■□□□□ 0.95
VPS13AQ96RL7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AL049597.2-201ENST00000565575 961 ntBASIC21.01■□□□□ 0.95
VPS13AQ96RL7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13AQ96RL7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21■□□□□ 0.95
VPS13AQ96RL7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
VPS13AQ96RL7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS13AQ96RL7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21■□□□□ 0.95
VPS13AQ96RL7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21■□□□□ 0.95
VPS13AQ96RL7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS13AQ96RL7 AC020928.2-201ENST00000588717 2197 ntBASIC21■□□□□ 0.95
VPS13AQ96RL7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 LINC01124-201ENST00000409786 2117 ntBASIC20.99■□□□□ 0.95
VPS13AQ96RL7 POM121L13P-201ENST00000422362 380 ntBASIC20.99■□□□□ 0.95
VPS13AQ96RL7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS13AQ96RL7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS13AQ96RL7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms