Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VPS33AQ96AX1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS33AQ96AX1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS33AQ96AX1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS33AQ96AX1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS33AQ96AX1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS33AQ96AX1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS33AQ96AX1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS33AQ96AX1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 AP006587.3-201ENST00000525742 1516 ntBASIC20.12■□□□□ 0.81
VPS33AQ96AX1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 AP005435.1-201ENST00000529293 1178 ntBASIC20.12■□□□□ 0.81
VPS33AQ96AX1 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 AL138724.1-201ENST00000606771 1088 ntBASIC20.12■□□□□ 0.81
VPS33AQ96AX1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 AC136469.2-201ENST00000623944 1028 ntBASIC20.12■□□□□ 0.81
VPS33AQ96AX1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS33AQ96AX1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 MIR4466-201ENST00000606121 54 ntBASIC20.11■□□□□ 0.81
VPS33AQ96AX1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS33AQ96AX1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VPS33AQ96AX1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS33AQ96AX1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms