Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 AC136469.2-201ENST00000623944 1028 ntBASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y2Q8TD47 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 SERBP1P1-201ENST00000396021 1160 ntBASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RPS4Y2Q8TD47 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 SLC47A1P1-202ENST00000449666 945 ntBASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.39■□□□□ 0.53
RPS4Y2Q8TD47 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y2Q8TD47 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 AC011298.3-201ENST00000615796 283 ntBASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
RPS4Y2Q8TD47 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 AC027702.1-201ENST00000563810 1770 ntBASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 SMUG1P1-201ENST00000590640 811 ntBASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.36■□□□□ 0.53
RPS4Y2Q8TD47 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPS4Y2Q8TD47 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms