Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AP006587.3-201ENST00000525742 1516 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 CNN2P6-201ENST00000439038 900 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 TSPY6P-201ENST00000448518 926 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 MYCNOS-205ENST00000641950 531 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC092068.2-201ENST00000590491 1708 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PPP1R14BP2-201ENST00000426284 444 ntBASIC6.44□□□□□ -1.38
SYNE1Q8NF91 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC6.44□□□□□ -1.38
SYNE1Q8NF91 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 PHB2-213ENST00000546111 858 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC010141.2-201ENST00000452426 721 ntBASIC6.43□□□□□ -1.38
SYNE1Q8NF91 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC073210.2-201ENST00000430369 194 ntBASIC6.43□□□□□ -1.38
SYNE1Q8NF91 RGMA-211ENST00000557420 989 ntTSL 3 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 AC068587.7-201ENST00000641602 218 ntBASIC6.43□□□□□ -1.38
SYNE1Q8NF91 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms