Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 AC123595.1-201ENST00000440769 1046 ntBASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 YBX1P1-201ENST00000445822 960 ntBASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC116Q8IYX3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC116Q8IYX3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 EEF1DP3-203ENST00000566025 782 ntBASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 AC053503.5-201ENST00000601508 636 ntBASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC116Q8IYX3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC116Q8IYX3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC116Q8IYX3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC116Q8IYX3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.77■□□□□ 0.75
CCDC116Q8IYX3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 KRT87P-202ENST00000534226 1464 ntBASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC116Q8IYX3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 CCDC92B-201ENST00000575506 885 ntBASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 TERF1P2-201ENST00000583350 1212 ntBASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC116Q8IYX3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms