Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 AC073314.1-201ENST00000568729 2216 ntBASIC13.2□□□□□ -0.3
LINC00643Q86TS7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC00643Q86TS7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00643Q86TS7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 AC144652.1-201ENST00000609974 1624 ntBASIC13.17□□□□□ -0.3
LINC00643Q86TS7 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00643Q86TS7 AC079598.2-202ENST00000546624 1451 ntBASIC13.16□□□□□ -0.3
LINC00643Q86TS7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms