Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 Z98882.1-201ENST00000622160 2253 ntBASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
TRIM40Q6P9F5 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM40Q6P9F5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.14■□□□□ 0.82
TRIM40Q6P9F5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM40Q6P9F5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 AC097381.1-201ENST00000429019 1296 ntBASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM40Q6P9F5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM40Q6P9F5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 AC053503.5-201ENST00000601508 636 ntBASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 MIR6821-201ENST00000617625 74 ntBASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM40Q6P9F5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 EEF1DP3-203ENST00000566025 782 ntBASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TRIM40Q6P9F5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM40Q6P9F5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 AC034268.1-201ENST00000441047 882 ntBASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 RARRES2P6-201ENST00000567333 442 ntBASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 AC005229.4-201ENST00000610085 2198 ntBASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms