Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
YBX1P67809 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
YBX1P67809 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
YBX1P67809 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
YBX1P67809 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 AC034268.1-201ENST00000441047 882 ntBASIC20.52■□□□□ 0.88
YBX1P67809 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.52■□□□□ 0.88
YBX1P67809 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.52■□□□□ 0.88
YBX1P67809 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.52■□□□□ 0.88
YBX1P67809 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.52■□□□□ 0.88
YBX1P67809 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.52■□□□□ 0.88
YBX1P67809 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
YBX1P67809 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
YBX1P67809 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.52■□□□□ 0.87
YBX1P67809 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.52■□□□□ 0.87
YBX1P67809 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.52■□□□□ 0.87
YBX1P67809 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.52■□□□□ 0.87
YBX1P67809 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
YBX1P67809 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 AL162430.1-201ENST00000480705 870 ntBASIC20.51■□□□□ 0.87
YBX1P67809 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.51■□□□□ 0.87
YBX1P67809 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
YBX1P67809 AC004854.2-201ENST00000608450 1441 ntBASIC20.51■□□□□ 0.87
YBX1P67809 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
YBX1P67809 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.51■□□□□ 0.87
YBX1P67809 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.5■□□□□ 0.87
YBX1P67809 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.5■□□□□ 0.87
YBX1P67809 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.5■□□□□ 0.87
YBX1P67809 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.5■□□□□ 0.87
YBX1P67809 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 AC079140.4-201ENST00000507448 529 ntBASIC20.5■□□□□ 0.87
YBX1P67809 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.5■□□□□ 0.87
YBX1P67809 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.5■□□□□ 0.87
YBX1P67809 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.5■□□□□ 0.87
YBX1P67809 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
YBX1P67809 AP004607.4-201ENST00000530158 1459 ntBASIC20.5■□□□□ 0.87
YBX1P67809 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.49■□□□□ 0.87
YBX1P67809 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
YBX1P67809 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.49■□□□□ 0.87
YBX1P67809 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.49■□□□□ 0.87
YBX1P67809 KRT18P5-201ENST00000436075 1291 ntBASIC20.49■□□□□ 0.87
YBX1P67809 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.49■□□□□ 0.87
YBX1P67809 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.49■□□□□ 0.87
YBX1P67809 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.49■□□□□ 0.87
YBX1P67809 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
YBX1P67809 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.48■□□□□ 0.87
YBX1P67809 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.48■□□□□ 0.87
YBX1P67809 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.48■□□□□ 0.87
YBX1P67809 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.48■□□□□ 0.87
YBX1P67809 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.48■□□□□ 0.87
YBX1P67809 MIR5787-201ENST00000611784 55 ntBASIC20.48■□□□□ 0.87
YBX1P67809 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.48■□□□□ 0.87
YBX1P67809 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
YBX1P67809 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.48■□□□□ 0.87
YBX1P67809 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms