Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH13P55290 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.54■□□□□ 0.88
CDH13P55290 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH13P55290 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.54■□□□□ 0.88
CDH13P55290 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CDH13P55290 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CDH13P55290 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH13P55290 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.53■□□□□ 0.88
CDH13P55290 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH13P55290 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.53■□□□□ 0.88
CDH13P55290 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CDH13P55290 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH13P55290 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH13P55290 TSPY26P-201ENST00000476365 1326 ntBASIC20.53■□□□□ 0.88
CDH13P55290 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH13P55290 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH13P55290 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.52■□□□□ 0.88
CDH13P55290 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH13P55290 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH13P55290 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.52■□□□□ 0.88
CDH13P55290 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.52■□□□□ 0.88
CDH13P55290 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH13P55290 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH13P55290 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH13P55290 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH13P55290 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH13P55290 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH13P55290 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
CDH13P55290 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH13P55290 AC105233.4-201ENST00000642045 216 ntBASIC20.51■□□□□ 0.87
CDH13P55290 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CDH13P55290 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH13P55290 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 AC055733.4-201ENST00000638462 1354 ntBASIC20.5■□□□□ 0.87
CDH13P55290 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH13P55290 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH13P55290 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH13P55290 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
CDH13P55290 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH13P55290 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH13P55290 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 AC009237.3-201ENST00000393279 1427 ntBASIC20.5■□□□□ 0.87
CDH13P55290 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH13P55290 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH13P55290 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH13P55290 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH13P55290 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH13P55290 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.49■□□□□ 0.87
CDH13P55290 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.49■□□□□ 0.87
CDH13P55290 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.49■□□□□ 0.87
CDH13P55290 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.49■□□□□ 0.87
CDH13P55290 AC106739.1-201ENST00000617035 715 ntBASIC20.49■□□□□ 0.87
CDH13P55290 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CDH13P55290 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH13P55290 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CDH13P55290 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH13P55290 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH13P55290 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms