Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.63■■□□□ 1.05
NEK3P51956 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.63■■□□□ 1.05
NEK3P51956 AP004607.7-201ENST00000527152 1677 ntBASIC21.63■■□□□ 1.05
NEK3P51956 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NEK3P51956 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NEK3P51956 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NEK3P51956 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.62■■□□□ 1.05
NEK3P51956 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
NEK3P51956 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.62■■□□□ 1.05
NEK3P51956 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.62■■□□□ 1.05
NEK3P51956 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NEK3P51956 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NEK3P51956 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.61■■□□□ 1.05
NEK3P51956 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.61■■□□□ 1.05
NEK3P51956 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NEK3P51956 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NEK3P51956 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.61■■□□□ 1.05
NEK3P51956 Z98882.1-201ENST00000622160 2253 ntBASIC21.61■■□□□ 1.05
NEK3P51956 AL034346.1-201ENST00000568244 1277 ntBASIC21.61■■□□□ 1.05
NEK3P51956 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.61■■□□□ 1.05
NEK3P51956 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NEK3P51956 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.6■■□□□ 1.05
NEK3P51956 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.6■■□□□ 1.05
NEK3P51956 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.6■■□□□ 1.05
NEK3P51956 KRT19P1-201ENST00000405746 1186 ntBASIC21.6■■□□□ 1.05
NEK3P51956 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.6■■□□□ 1.05
NEK3P51956 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.6■■□□□ 1.05
NEK3P51956 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.6■■□□□ 1.05
NEK3P51956 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
NEK3P51956 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.6■■□□□ 1.05
NEK3P51956 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
NEK3P51956 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.59■■□□□ 1.05
NEK3P51956 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.59■■□□□ 1.05
NEK3P51956 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.59■■□□□ 1.05
NEK3P51956 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NEK3P51956 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
NEK3P51956 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
NEK3P51956 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
NEK3P51956 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.58■■□□□ 1.05
NEK3P51956 AC004911.1-201ENST00000416316 871 ntBASIC21.58■■□□□ 1.05
NEK3P51956 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.58■■□□□ 1.05
NEK3P51956 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.58■■□□□ 1.05
NEK3P51956 AC137761.2-201ENST00000561729 223 ntBASIC21.58■■□□□ 1.05
NEK3P51956 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.58■■□□□ 1.05
NEK3P51956 AC145350.3-201ENST00000569033 163 ntBASIC21.58■■□□□ 1.05
NEK3P51956 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NEK3P51956 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
NEK3P51956 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.58■■□□□ 1.04
NEK3P51956 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NEK3P51956 KRT87P-202ENST00000534226 1464 ntBASIC21.58■■□□□ 1.04
NEK3P51956 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NEK3P51956 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
NEK3P51956 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NEK3P51956 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 AC073130.3-201ENST00000624389 2278 ntBASIC21.57■■□□□ 1.04
NEK3P51956 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.57■■□□□ 1.04
NEK3P51956 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NEK3P51956 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.57■■□□□ 1.04
NEK3P51956 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.57■■□□□ 1.04
NEK3P51956 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NEK3P51956 AC055733.4-201ENST00000638462 1354 ntBASIC21.57■■□□□ 1.04
NEK3P51956 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.57■■□□□ 1.04
NEK3P51956 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.56■■□□□ 1.04
NEK3P51956 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms