Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.81■■□□□ 1.08
COL9A1P20849 AC007322.4-201ENST00000509611 723 ntBASIC21.81■■□□□ 1.08
COL9A1P20849 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.81■■□□□ 1.08
COL9A1P20849 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.81■■□□□ 1.08
COL9A1P20849 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
COL9A1P20849 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL9A1P20849 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL9A1P20849 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL9A1P20849 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL9A1P20849 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 LINC01960-201ENST00000563759 1884 ntBASIC21.8■■□□□ 1.08
COL9A1P20849 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.8■■□□□ 1.08
COL9A1P20849 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.8■■□□□ 1.08
COL9A1P20849 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL9A1P20849 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL9A1P20849 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.79■■□□□ 1.08
COL9A1P20849 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.79■■□□□ 1.08
COL9A1P20849 AC079089.2-201ENST00000531211 1277 ntBASIC21.79■■□□□ 1.08
COL9A1P20849 AL355075.4-201ENST00000554988 638 ntBASIC21.79■■□□□ 1.08
COL9A1P20849 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.79■■□□□ 1.08
COL9A1P20849 AL049637.2-201ENST00000641778 930 ntBASIC21.79■■□□□ 1.08
COL9A1P20849 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL9A1P20849 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.79■■□□□ 1.08
COL9A1P20849 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL9A1P20849 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL9A1P20849 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.78■■□□□ 1.08
COL9A1P20849 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
COL9A1P20849 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.78■■□□□ 1.08
COL9A1P20849 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.78■■□□□ 1.08
COL9A1P20849 KRT18P20-201ENST00000548986 1279 ntBASIC21.78■■□□□ 1.08
COL9A1P20849 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.78■■□□□ 1.08
COL9A1P20849 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL9A1P20849 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.78■■□□□ 1.08
COL9A1P20849 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.78■■□□□ 1.08
COL9A1P20849 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.78■■□□□ 1.08
COL9A1P20849 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL9A1P20849 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.78■■□□□ 1.08
COL9A1P20849 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.77■■□□□ 1.08
COL9A1P20849 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.77■■□□□ 1.08
COL9A1P20849 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
COL9A1P20849 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.77■■□□□ 1.08
COL9A1P20849 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.77■■□□□ 1.08
COL9A1P20849 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.77■■□□□ 1.08
COL9A1P20849 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.77■■□□□ 1.08
COL9A1P20849 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
COL9A1P20849 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 AP001412.1-201ENST00000608405 714 ntBASIC21.77■■□□□ 1.08
COL9A1P20849 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.77■■□□□ 1.08
COL9A1P20849 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.77■■□□□ 1.08
COL9A1P20849 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL9A1P20849 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.77■■□□□ 1.08
COL9A1P20849 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.76■■□□□ 1.07
COL9A1P20849 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.76■■□□□ 1.07
COL9A1P20849 AC087388.1-201ENST00000571370 1112 ntBASIC21.76■■□□□ 1.07
COL9A1P20849 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.76■■□□□ 1.07
COL9A1P20849 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL9A1P20849 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL9A1P20849 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.75■■□□□ 1.07
COL9A1P20849 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
COL9A1P20849 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.75■■□□□ 1.07
COL9A1P20849 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.75■■□□□ 1.07
COL9A1P20849 NTF6B-201ENST00000591913 560 ntBASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms