Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CACNA1FO60840 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
CACNA1FO60840 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.71■■□□□ 1.87
CACNA1FO60840 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CACNA1FO60840 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
CACNA1FO60840 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CACNA1FO60840 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
CACNA1FO60840 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.7■■□□□ 1.86
CACNA1FO60840 AC007322.3-201ENST00000426526 701 ntBASIC26.7■■□□□ 1.86
CACNA1FO60840 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
CACNA1FO60840 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.7■■□□□ 1.86
CACNA1FO60840 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
CACNA1FO60840 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.7■■□□□ 1.86
CACNA1FO60840 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC26.7■■□□□ 1.86
CACNA1FO60840 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.7■■□□□ 1.86
CACNA1FO60840 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CACNA1FO60840 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC26.7■■□□□ 1.86
CACNA1FO60840 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 CROCCP5-201ENST00000436658 830 ntBASIC26.69■■□□□ 1.86
CACNA1FO60840 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC26.69■■□□□ 1.86
CACNA1FO60840 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.69■■□□□ 1.86
CACNA1FO60840 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC26.69■■□□□ 1.86
CACNA1FO60840 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.69■■□□□ 1.86
CACNA1FO60840 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
CACNA1FO60840 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.69■■□□□ 1.86
CACNA1FO60840 TK2-208ENST00000545043 1120 ntTSL 2 BASIC26.69■■□□□ 1.86
CACNA1FO60840 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1FO60840 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.68■■□□□ 1.86
CACNA1FO60840 Z98882.1-201ENST00000622160 2253 ntBASIC26.68■■□□□ 1.86
CACNA1FO60840 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
CACNA1FO60840 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CACNA1FO60840 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.68■■□□□ 1.86
CACNA1FO60840 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC26.68■■□□□ 1.86
CACNA1FO60840 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.67■■□□□ 1.86
CACNA1FO60840 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.67■■□□□ 1.86
CACNA1FO60840 AC080038.1-201ENST00000611274 1154 ntBASIC26.67■■□□□ 1.86
CACNA1FO60840 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 AC091799.1-201ENST00000422823 811 ntBASIC26.67■■□□□ 1.86
CACNA1FO60840 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1FO60840 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.66■■□□□ 1.86
CACNA1FO60840 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
CACNA1FO60840 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.66■■□□□ 1.86
CACNA1FO60840 AC245052.3-201ENST00000450182 901 ntBASIC26.66■■□□□ 1.86
CACNA1FO60840 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.66■■□□□ 1.86
CACNA1FO60840 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.66■■□□□ 1.86
CACNA1FO60840 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26.66■■□□□ 1.86
CACNA1FO60840 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC26.66■■□□□ 1.86
CACNA1FO60840 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CACNA1FO60840 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC26.66■■□□□ 1.86
CACNA1FO60840 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC26.66■■□□□ 1.86
CACNA1FO60840 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CACNA1FO60840 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.66■■□□□ 1.86
CACNA1FO60840 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CACNA1FO60840 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CACNA1FO60840 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
CACNA1FO60840 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC26.65■■□□□ 1.86
CACNA1FO60840 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1FO60840 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1FO60840 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CACNA1FO60840 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.65■■□□□ 1.86
CACNA1FO60840 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1FO60840 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1FO60840 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1FO60840 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CACNA1FO60840 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.64■■□□□ 1.86
CACNA1FO60840 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CACNA1FO60840 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CACNA1FO60840 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC26.64■■□□□ 1.86
CACNA1FO60840 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.64■■□□□ 1.86
CACNA1FO60840 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.64■■□□□ 1.86
CACNA1FO60840 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.64■■□□□ 1.86
CACNA1FO60840 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CACNA1FO60840 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.64■■□□□ 1.85
CACNA1FO60840 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
CACNA1FO60840 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CACNA1FO60840 AF201337.1-201ENST00000520239 748 ntBASIC26.64■■□□□ 1.85
CACNA1FO60840 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.64■■□□□ 1.85
CACNA1FO60840 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.64■■□□□ 1.85
CACNA1FO60840 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CACNA1FO60840 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.63■■□□□ 1.85
CACNA1FO60840 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC26.63■■□□□ 1.85
CACNA1FO60840 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms