Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB3O15347 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB3O15347 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HMGB3O15347 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
HMGB3O15347 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB3O15347 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGB3O15347 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HMGB3O15347 PCDHAC2-203ENST00000615316 3011 ntBASIC16.9■□□□□ 0.3
HMGB3O15347 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB3O15347 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB3O15347 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB3O15347 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB3O15347 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB3O15347 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HMGB3O15347 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB3O15347 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB3O15347 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
HMGB3O15347 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB3O15347 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
HMGB3O15347 AC004687.1-201ENST00000579003 1625 ntBASIC16.88■□□□□ 0.29
HMGB3O15347 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB3O15347 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGB3O15347 AC139795.1-202ENST00000500444 432 ntBASIC16.88■□□□□ 0.29
HMGB3O15347 AC009086.3-201ENST00000623486 1008 ntBASIC16.88■□□□□ 0.29
HMGB3O15347 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB3O15347 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB3O15347 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HMGB3O15347 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 AC007952.6-201ENST00000573168 2673 ntBASIC16.88■□□□□ 0.29
HMGB3O15347 AC003957.1-201ENST00000625108 2673 ntBASIC16.88■□□□□ 0.29
HMGB3O15347 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB3O15347 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB3O15347 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB3O15347 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB3O15347 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HMGB3O15347 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB3O15347 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
HMGB3O15347 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB3O15347 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB3O15347 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB3O15347 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB3O15347 THA1P-201ENST00000590384 1145 ntBASIC16.87■□□□□ 0.29
HMGB3O15347 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB3O15347 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB3O15347 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB3O15347 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB3O15347 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB3O15347 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
HMGB3O15347 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB3O15347 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB3O15347 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB3O15347 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
HMGB3O15347 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HMGB3O15347 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms