Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 GUSBP6-202ENST00000438529 1198 ntBASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 TSPY6P-201ENST00000448518 926 ntBASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 AC243732.1-201ENST00000612648 864 ntBASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 AL117328.2-201ENST00000624617 1940 ntBASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMIM28A0A1B0GU29 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SMIM28A0A1B0GU29 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.64■■□□□ 1.22
SMIM28A0A1B0GU29 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMIM28A0A1B0GU29 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 CYP2T1P-201ENST00000432607 1285 ntBASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 AF201337.1-201ENST00000520239 748 ntBASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22.63■■□□□ 1.21
SMIM28A0A1B0GU29 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 AL355802.2-201ENST00000402069 882 ntBASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 AC105036.2-201ENST00000569468 176 ntBASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMIM28A0A1B0GU29 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMIM28A0A1B0GU29 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMIM28A0A1B0GU29 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 AC142086.2-201ENST00000569753 217 ntBASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 AL591742.1-201ENST00000604433 565 ntBASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms