Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC40.3■■■■■ 4.04
SHROOM4Q9ULL8 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC40.3■■■■■ 4.04
SHROOM4Q9ULL8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC40.29■■■■■ 4.04
SHROOM4Q9ULL8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC40.29■■■■■ 4.04
SHROOM4Q9ULL8 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC40.29■■■■■ 4.04
SHROOM4Q9ULL8 EEF1DP3-203ENST00000566025 782 ntBASIC40.29■■■■■ 4.04
SHROOM4Q9ULL8 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC40.29■■■■■ 4.04
SHROOM4Q9ULL8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC40.28■■■■■ 4.04
SHROOM4Q9ULL8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 AC008694.1-202ENST00000636953 945 ntBASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC40.27■■■■■ 4.04
SHROOM4Q9ULL8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 FXN-202ENST00000396364 980 ntTSL 5 BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC40.26■■■■■ 4.04
SHROOM4Q9ULL8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC40.26■■■■■ 4.03
SHROOM4Q9ULL8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC40.25■■■■■ 4.03
SHROOM4Q9ULL8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC40.24■■■■■ 4.03
SHROOM4Q9ULL8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
SHROOM4Q9ULL8 ME2-208ENST00000638937 2471 ntTSL 5 BASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 C1orf229-201ENST00000623686 2258 ntBASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC40.22■■■■■ 4.03
SHROOM4Q9ULL8 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
SHROOM4Q9ULL8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC40.2■■■■■ 4.03
SHROOM4Q9ULL8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC40.2■■■■■ 4.03
SHROOM4Q9ULL8 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC40.2■■■■■ 4.03
SHROOM4Q9ULL8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC40.2■■■■■ 4.03
SHROOM4Q9ULL8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC40.2■■■■■ 4.03
SHROOM4Q9ULL8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 ECEL1P3-201ENST00000427961 737 ntBASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.03
SHROOM4Q9ULL8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC40.19■■■■■ 4.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms