Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.33■□□□□ 0.52
NKX3-1Q99801 AL512631.2-201ENST00000604634 923 ntBASIC18.33■□□□□ 0.52
NKX3-1Q99801 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
NKX3-1Q99801 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.33■□□□□ 0.52
NKX3-1Q99801 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX3-1Q99801 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.33■□□□□ 0.52
NKX3-1Q99801 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
NKX3-1Q99801 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX3-1Q99801 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.32■□□□□ 0.52
NKX3-1Q99801 SRD5A1P1-201ENST00000442297 786 ntBASIC18.32■□□□□ 0.52
NKX3-1Q99801 AC010141.3-201ENST00000456659 717 ntBASIC18.32■□□□□ 0.52
NKX3-1Q99801 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX3-1Q99801 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
NKX3-1Q99801 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.31■□□□□ 0.52
NKX3-1Q99801 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.31■□□□□ 0.52
NKX3-1Q99801 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.31■□□□□ 0.52
NKX3-1Q99801 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.31■□□□□ 0.52
NKX3-1Q99801 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX3-1Q99801 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
NKX3-1Q99801 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX3-1Q99801 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
NKX3-1Q99801 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 AP004607.7-201ENST00000527152 1677 ntBASIC18.29■□□□□ 0.52
NKX3-1Q99801 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX3-1Q99801 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 SERBP1P1-201ENST00000396021 1160 ntBASIC18.29■□□□□ 0.52
NKX3-1Q99801 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX3-1Q99801 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.29■□□□□ 0.52
NKX3-1Q99801 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX3-1Q99801 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX3-1Q99801 OXCT2P1-201ENST00000447263 1535 ntBASIC18.28■□□□□ 0.52
NKX3-1Q99801 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
NKX3-1Q99801 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.28■□□□□ 0.52
NKX3-1Q99801 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.28■□□□□ 0.52
NKX3-1Q99801 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX3-1Q99801 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NKX3-1Q99801 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
NKX3-1Q99801 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX3-1Q99801 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NKX3-1Q99801 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX3-1Q99801 MIR4466-201ENST00000606121 54 ntBASIC18.27■□□□□ 0.52
NKX3-1Q99801 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms