Protein–RNA interactions for Protein: Q99732

LITAF, Lipopolysaccharide-induced tumor necrosis factor-alpha factor, humanhuman

Predictions only

Length 161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LITAFQ99732 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LITAFQ99732 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.07□□□□□ -0.16
LITAFQ99732 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 AC116562.4-201ENST00000641316 2276 ntBASIC14.07□□□□□ -0.16
LITAFQ99732 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC14.07□□□□□ -0.16
LITAFQ99732 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LITAFQ99732 AL512408.1-201ENST00000569378 2000 ntBASIC14.07□□□□□ -0.16
LITAFQ99732 OR7E47P-201ENST00000546390 1422 ntBASIC14.07□□□□□ -0.16
LITAFQ99732 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 EI24-211ENST00000534546 1544 ntTSL 2 BASIC14.06□□□□□ -0.16
LITAFQ99732 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
LITAFQ99732 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC14.06□□□□□ -0.16
LITAFQ99732 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LITAFQ99732 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC14.06□□□□□ -0.16
LITAFQ99732 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC14.06□□□□□ -0.16
LITAFQ99732 AC099778.1-201ENST00000568593 1911 ntBASIC14.05□□□□□ -0.16
LITAFQ99732 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC14.05□□□□□ -0.16
LITAFQ99732 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC14.05□□□□□ -0.16
LITAFQ99732 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LITAFQ99732 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 MIR639-201ENST00000384974 98 ntBASIC14.05□□□□□ -0.16
LITAFQ99732 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC14.05□□□□□ -0.16
LITAFQ99732 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
LITAFQ99732 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LITAFQ99732 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC14.05□□□□□ -0.16
LITAFQ99732 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
LITAFQ99732 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC14.05□□□□□ -0.16
LITAFQ99732 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LITAFQ99732 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LITAFQ99732 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC14.04□□□□□ -0.16
LITAFQ99732 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 KRT18P24-201ENST00000344739 1156 ntBASIC14.04□□□□□ -0.16
LITAFQ99732 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC14.04□□□□□ -0.16
LITAFQ99732 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC14.04□□□□□ -0.16
LITAFQ99732 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.04□□□□□ -0.16
LITAFQ99732 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.04□□□□□ -0.16
LITAFQ99732 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LITAFQ99732 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LITAFQ99732 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC14.03□□□□□ -0.16
LITAFQ99732 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC14.03□□□□□ -0.16
LITAFQ99732 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC14.03□□□□□ -0.16
LITAFQ99732 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LITAFQ99732 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms