Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
VPS33AQ96AX1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 AL034346.1-201ENST00000568244 1277 ntBASIC20.2■□□□□ 0.82
VPS33AQ96AX1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
VPS33AQ96AX1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 FEM1AP1-201ENST00000431297 1995 ntBASIC20.19■□□□□ 0.82
VPS33AQ96AX1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.19■□□□□ 0.82
VPS33AQ96AX1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS33AQ96AX1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 SERBP1P1-201ENST00000396021 1160 ntBASIC20.18■□□□□ 0.82
VPS33AQ96AX1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS33AQ96AX1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS33AQ96AX1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS33AQ96AX1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS33AQ96AX1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS33AQ96AX1 RNF165-205ENST00000588679 2904 ntBASIC20.17■□□□□ 0.82
VPS33AQ96AX1 AC092667.1-201ENST00000434301 2586 ntBASIC20.17■□□□□ 0.82
VPS33AQ96AX1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS33AQ96AX1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.16■□□□□ 0.82
VPS33AQ96AX1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS33AQ96AX1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 SLC47A1P1-202ENST00000449666 945 ntBASIC20.15■□□□□ 0.82
VPS33AQ96AX1 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 SYT6-210ENST00000641643 1587 ntBASIC20.15■□□□□ 0.82
VPS33AQ96AX1 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS33AQ96AX1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms