Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.673e-24■■■□□ 15.9
DDX55Q8NHQ9 TTLL12-203ENST00000484711 2451 ntTSL 216.54■□□□□ 0.243e-24■■■□□ 15.9
DDX55Q8NHQ9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.662e-20■■■□□ 15.9
DDX55Q8NHQ9 COX5B-202ENST00000464949 613 ntTSL 525.33■■□□□ 1.652e-20■■■□□ 15.9
DDX55Q8NHQ9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.541e-7■■■□□ 15.9
DDX55Q8NHQ9 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC13.82□□□□□ -0.26e-8■■■□□ 15.9
DDX55Q8NHQ9 RPL31-211ENST00000456292 357 ntTSL 26.07□□□□□ -1.446e-8■■■□□ 15.9
DDX55Q8NHQ9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.371e-9■■■□□ 15.9
DDX55Q8NHQ9 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.92□□□□□ -1.141e-9■■■□□ 15.9
DDX55Q8NHQ9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.723e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-202ENST00000577523 776 ntTSL 227.44■■□□□ 1.983e-6■■■□□ 15.8
DDX55Q8NHQ9 PET100-207ENST00000623154 1815 nt27.17■■□□□ 1.941e-15■■■□□ 15.8
DDX55Q8NHQ9 MFSD3-203ENST00000528047 1433 ntTSL 326.73■■□□□ 1.873e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-213ENST00000583655 1315 ntTSL 226.39■■□□□ 1.813e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.763e-6■■■□□ 15.8
DDX55Q8NHQ9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.651e-15■■■□□ 15.8
DDX55Q8NHQ9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.633e-6■■■□□ 15.8
DDX55Q8NHQ9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.613e-6■■■□□ 15.8
DDX55Q8NHQ9 NAA10-206ENST00000432089 599 ntTSL 323.99■■□□□ 1.433e-6■■■□□ 15.8
DDX55Q8NHQ9 AC008763.2-202ENST00000599243 570 ntAPPRIS ALT2 TSL 423.74■■□□□ 1.391e-15■■■□□ 15.8
DDX55Q8NHQ9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC23.67■■□□□ 1.383e-6■■■□□ 15.8
DDX55Q8NHQ9 MKNK2-205ENST00000586828 1503 ntTSL 223.43■■□□□ 1.343e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-209ENST00000580758 958 ntTSL 223.13■■□□□ 1.293e-6■■■□□ 15.8
DDX55Q8NHQ9 CC2D1A-204ENST00000587508 1667 ntTSL 523.01■■□□□ 1.273e-6■■■□□ 15.8
DDX55Q8NHQ9 NAA10-210ENST00000467451 743 ntTSL 223.01■■□□□ 1.273e-6■■■□□ 15.8
DDX55Q8NHQ9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.251e-22■■■□□ 15.8
DDX55Q8NHQ9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.243e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.7■■□□□ 1.223e-6■■■□□ 15.8
DDX55Q8NHQ9 BAG6-257ENST00000462875 972 ntTSL 222.61■■□□□ 1.213e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-205ENST00000578407 720 ntTSL 322.52■■□□□ 1.23e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-214ENST00000584352 503 ntTSL 222.46■■□□□ 1.193e-6■■■□□ 15.8
DDX55Q8NHQ9 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.79■■□□□ 1.083e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-206ENST00000467597 776 ntTSL 221.34■■□□□ 1.013e-6■■■□□ 15.8
DDX55Q8NHQ9 MFSD3-204ENST00000534427 849 ntTSL 221.26■□□□□ 0.993e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-208ENST00000580423 450 ntTSL 221.07■□□□□ 0.963e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-229ENST00000514234 2562 ntTSL 220.75■□□□□ 0.913e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-230ENST00000514363 592 ntTSL 320.59■□□□□ 0.893e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-222ENST00000507229 2582 ntTSL 220.32■□□□□ 0.843e-6■■■□□ 15.8
DDX55Q8NHQ9 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.833e-6■■■□□ 15.8
DDX55Q8NHQ9 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.833e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.89■□□□□ 0.773e-6■■■□□ 15.8
DDX55Q8NHQ9 NT5C-212ENST00000582744 921 ntTSL 219.82■□□□□ 0.763e-6■■■□□ 15.8
DDX55Q8NHQ9 LPCAT4-205ENST00000563748 1357 ntTSL 219.59■□□□□ 0.733e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-204ENST00000467160 2431 ntTSL 219.43■□□□□ 0.73e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.41■□□□□ 0.73e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-213ENST00000487053 3252 ntTSL 519.4■□□□□ 0.73e-6■■■□□ 15.8
DDX55Q8NHQ9 NAA10-202ENST00000370011 538 ntTSL 519.38■□□□□ 0.691e-14■■■□□ 15.8
DDX55Q8NHQ9 LPCAT4-204ENST00000563240 939 ntTSL 218.82■□□□□ 0.63e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.583e-6■■■□□ 15.8
DDX55Q8NHQ9 ZFAND2B-218ENST00000476713 562 ntTSL 218.28■□□□□ 0.523e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.523e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-220ENST00000506488 2997 ntTSL 518.24■□□□□ 0.513e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.16■□□□□ 0.53e-6■■■□□ 15.8
DDX55Q8NHQ9 MKNK2-207ENST00000588014 2413 ntTSL 218.15■□□□□ 0.56e-7■■■□□ 15.8
DDX55Q8NHQ9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.463e-6■■■□□ 15.8
DDX55Q8NHQ9 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.441e-15■■■□□ 15.8
DDX55Q8NHQ9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.413e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.383e-6■■■□□ 15.8
DDX55Q8NHQ9 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC17.24■□□□□ 0.353e-6■■■□□ 15.8
DDX55Q8NHQ9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.333e-6■■■□□ 15.8
DDX55Q8NHQ9 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.94■□□□□ 0.33e-6■■■□□ 15.8
DDX55Q8NHQ9 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.94■□□□□ 0.33e-6■■■□□ 15.8
DDX55Q8NHQ9 CC2D1A-203ENST00000586955 2743 ntTSL 1 (best)16.9■□□□□ 0.33e-6■■■□□ 15.8
DDX55Q8NHQ9 PET100-204ENST00000600836 474 ntTSL 316.88■□□□□ 0.291e-15■■■□□ 15.8
DDX55Q8NHQ9 MIB2-214ENST00000489635 3034 ntTSL 216.54■□□□□ 0.243e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-210ENST00000479659 4247 ntTSL 216.51■□□□□ 0.233e-6■■■□□ 15.8
DDX55Q8NHQ9 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC16.42■□□□□ 0.223e-6■■■□□ 15.8
DDX55Q8NHQ9 NINL-202ENST00000336104 439 ntTSL 316.32■□□□□ 0.23e-6■■■□□ 15.8
DDX55Q8NHQ9 ZFAND2B-215ENST00000468301 534 ntTSL 416.25■□□□□ 0.193e-6■■■□□ 15.8
DDX55Q8NHQ9 MIB2-226ENST00000511502 3326 ntTSL 216.09■□□□□ 0.173e-6■■■□□ 15.8
DDX55Q8NHQ9 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.13e-6■■■□□ 15.8
DDX55Q8NHQ9 HDAC3-204ENST00000469207 829 ntTSL 315.42■□□□□ 0.063e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-207ENST00000473243 4729 ntTSL 215.35■□□□□ 0.053e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.18■□□□□ 0.023e-6■■■□□ 15.8
DDX55Q8NHQ9 INF2-201ENST00000252527 3050 ntTSL 215.05■□□□□ -03e-6■■■□□ 15.8
DDX55Q8NHQ9 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.013e-6■■■□□ 15.8
DDX55Q8NHQ9 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC14.94□□□□□ -0.028e-9■■■□□ 15.8
DDX55Q8NHQ9 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.93□□□□□ -0.023e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.053e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-214ENST00000497556 2442 ntTSL 214.64□□□□□ -0.073e-6■■■□□ 15.8
DDX55Q8NHQ9 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.073e-6■■■□□ 15.8
DDX55Q8NHQ9 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.078e-9■■■□□ 15.8
DDX55Q8NHQ9 NUMA1-229ENST00000545721 2796 ntTSL 514.53□□□□□ -0.083e-6■■■□□ 15.8
DDX55Q8NHQ9 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.143e-6■■■□□ 15.8
DDX55Q8NHQ9 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.163e-6■■■□□ 15.8
DDX55Q8NHQ9 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.23e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-205ENST00000445642 3717 ntTSL 2 BASIC13.42□□□□□ -0.263e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-203ENST00000379454 5268 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.313e-6■■■□□ 15.8
DDX55Q8NHQ9 ZFAND2B-220ENST00000489197 855 ntTSL 312.26□□□□□ -0.453e-6■■■□□ 15.8
DDX55Q8NHQ9 C2orf72-202ENST00000463834 3141 ntTSL 1 (best)12.06□□□□□ -0.481e-22■■■□□ 15.8
DDX55Q8NHQ9 ASPH-201ENST00000356457 3730 ntTSL 1 (best) BASIC11.96□□□□□ -0.493e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-201ENST00000291503 3483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.573e-6■■■□□ 15.8
DDX55Q8NHQ9 ATP13A1-205ENST00000469641 4241 ntTSL 211.41□□□□□ -0.583e-6■■■□□ 15.8
DDX55Q8NHQ9 NUP188-201ENST00000372577 5689 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.61e-9■■■□□ 15.8
DDX55Q8NHQ9 HDAC3-205ENST00000469550 1952 ntTSL 1 (best)10.81□□□□□ -0.683e-6■■■□□ 15.8
DDX55Q8NHQ9 PET100-201ENST00000456958 219 ntTSL 2 BASIC10.8□□□□□ -0.681e-15■■■□□ 15.8
DDX55Q8NHQ9 NUMA1-216ENST00000540588 216 ntTSL 210.71□□□□□ -0.693e-6■■■□□ 15.8
DDX55Q8NHQ9 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.773e-6■■■□□ 15.8
DDX55Q8NHQ9 LPCAT4-207ENST00000567507 672 ntTSL 310□□□□□ -0.813e-6■■■□□ 15.8
DDX55Q8NHQ9 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC9.55□□□□□ -0.883e-6■■■□□ 15.8
Retrieved 100 of 15,504 protein–RNA pairs in 121.1 ms