Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00643Q86TS7 OXCT2P1-201ENST00000447263 1535 ntBASIC13.23□□□□□ -0.29
LINC00643Q86TS7 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 FZD10-202ENST00000539839 3282 ntBASIC13.23□□□□□ -0.29
LINC00643Q86TS7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LINC00643Q86TS7 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00643Q86TS7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 AL031258.1-201ENST00000623562 325 ntBASIC13.21□□□□□ -0.29
LINC00643Q86TS7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00643Q86TS7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC13.21□□□□□ -0.3
LINC00643Q86TS7 AL359504.2-201ENST00000605506 1601 ntBASIC13.21□□□□□ -0.3
LINC00643Q86TS7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00643Q86TS7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms