Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 KRT16P2-201ENST00000414673 1423 ntBASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 POU5F1P4-201ENST00000413175 1085 ntBASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.46■□□□□ 0.38
CSPG4Q6UVK1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 LINC00526-201ENST00000581067 1875 ntBASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSPG4Q6UVK1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 OR7E47P-201ENST00000546390 1422 ntBASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 AC012618.2-201ENST00000428058 849 ntBASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSPG4Q6UVK1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.43■□□□□ 0.38
CSPG4Q6UVK1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 REXO1L12P-201ENST00000622156 912 ntBASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC17.42■□□□□ 0.38
CSPG4Q6UVK1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms