Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 AL034346.1-201ENST00000568244 1277 ntBASIC18.76■□□□□ 0.59
CCDC58Q4VC31 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC58Q4VC31 AL049796.1-201ENST00000565336 1766 ntBASIC18.76■□□□□ 0.59
CCDC58Q4VC31 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC58Q4VC31 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 pRNA.6-201ENST00000610482 90 ntBASIC18.74■□□□□ 0.59
CCDC58Q4VC31 pRNA.5-201ENST00000612139 90 ntBASIC18.74■□□□□ 0.59
CCDC58Q4VC31 pRNA.11-201ENST00000618423 90 ntBASIC18.74■□□□□ 0.59
CCDC58Q4VC31 pRNA.13-201ENST00000619112 90 ntBASIC18.74■□□□□ 0.59
CCDC58Q4VC31 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC58Q4VC31 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 MIR6724-1-201ENST00000616420 92 ntBASIC18.73■□□□□ 0.59
CCDC58Q4VC31 MIR6724-2-201ENST00000616483 92 ntBASIC18.73■□□□□ 0.59
CCDC58Q4VC31 MIR6724-4-201ENST00000617390 92 ntBASIC18.73■□□□□ 0.59
CCDC58Q4VC31 MIR6724-3-201ENST00000622482 92 ntBASIC18.73■□□□□ 0.59
CCDC58Q4VC31 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC58Q4VC31 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 TSPY9P-201ENST00000440215 945 ntBASIC18.72■□□□□ 0.59
CCDC58Q4VC31 TSPY11P-201ENST00000442607 1045 ntBASIC18.72■□□□□ 0.59
CCDC58Q4VC31 OR2I1P-207ENST00000453522 948 ntBASIC18.72■□□□□ 0.59
CCDC58Q4VC31 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms