Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 AC005224.4-201ENST00000583262 1652 ntBASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CCDC40Q4G0X9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CCDC40Q4G0X9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
CCDC40Q4G0X9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC40Q4G0X9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 AC142381.2-201ENST00000566120 298 ntBASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 AC055733.4-201ENST00000638462 1354 ntBASIC23.14■■□□□ 1.29
CCDC40Q4G0X9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC40Q4G0X9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC40Q4G0X9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC40Q4G0X9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms