Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 TSPY13P-201ENST00000338964 914 ntBASIC14.64□□□□□ -0.07
CKS1BP61024 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 AC004987.1-201ENST00000428627 508 ntBASIC14.64□□□□□ -0.07
CKS1BP61024 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CKS1BP61024 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CKS1BP61024 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CKS1BP61024 AC005703.6-201ENST00000623265 1329 ntBASIC14.64□□□□□ -0.07
CKS1BP61024 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CKS1BP61024 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CKS1BP61024 AC087742.1-201ENST00000575880 1738 ntBASIC14.63□□□□□ -0.07
CKS1BP61024 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
CKS1BP61024 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC14.63□□□□□ -0.07
CKS1BP61024 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 FP325331.1-202ENST00000623531 1380 ntBASIC14.63□□□□□ -0.07
CKS1BP61024 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 SNX5-217ENST00000606557 1087 ntBASIC14.63□□□□□ -0.07
CKS1BP61024 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 AC009086.3-201ENST00000623486 1008 ntBASIC14.63□□□□□ -0.07
CKS1BP61024 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
CKS1BP61024 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.63□□□□□ -0.07
CKS1BP61024 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
CKS1BP61024 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CKS1BP61024 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC14.63□□□□□ -0.07
CKS1BP61024 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CKS1BP61024 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC14.62□□□□□ -0.07
CKS1BP61024 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 YBX1P4-201ENST00000392794 808 ntBASIC14.62□□□□□ -0.07
CKS1BP61024 TK2-202ENST00000417693 1046 ntTSL 2 BASIC14.62□□□□□ -0.07
CKS1BP61024 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC14.62□□□□□ -0.07
CKS1BP61024 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC14.62□□□□□ -0.07
CKS1BP61024 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC14.62□□□□□ -0.07
CKS1BP61024 PVT1_1.1-201ENST00000615125 194 ntBASIC14.62□□□□□ -0.07
CKS1BP61024 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC14.62□□□□□ -0.07
CKS1BP61024 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CKS1BP61024 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC14.62□□□□□ -0.07
CKS1BP61024 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CKS1BP61024 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CKS1BP61024 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CKS1BP61024 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CKS1BP61024 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC14.61□□□□□ -0.07
CKS1BP61024 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 LINC01960-201ENST00000563759 1884 ntBASIC14.61□□□□□ -0.07
CKS1BP61024 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms