Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
FOXA1P55317 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.42■□□□□ 0.86
FOXA1P55317 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
FOXA1P55317 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.42■□□□□ 0.86
FOXA1P55317 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.42■□□□□ 0.86
FOXA1P55317 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.41■□□□□ 0.86
FOXA1P55317 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 LINC01006-201ENST00000333319 2292 ntBASIC20.41■□□□□ 0.86
FOXA1P55317 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.41■□□□□ 0.86
FOXA1P55317 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.41■□□□□ 0.86
FOXA1P55317 AC008764.7-201ENST00000593779 1081 ntBASIC20.41■□□□□ 0.86
FOXA1P55317 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
FOXA1P55317 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
FOXA1P55317 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA1P55317 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.41■□□□□ 0.86
FOXA1P55317 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.41■□□□□ 0.86
FOXA1P55317 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
FOXA1P55317 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
FOXA1P55317 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
FOXA1P55317 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.4■□□□□ 0.86
FOXA1P55317 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.4■□□□□ 0.86
FOXA1P55317 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.4■□□□□ 0.86
FOXA1P55317 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.4■□□□□ 0.86
FOXA1P55317 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
FOXA1P55317 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA1P55317 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.39■□□□□ 0.86
FOXA1P55317 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.39■□□□□ 0.86
FOXA1P55317 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA1P55317 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA1P55317 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA1P55317 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
FOXA1P55317 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA1P55317 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.39■□□□□ 0.85
FOXA1P55317 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA1P55317 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA1P55317 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA1P55317 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.39■□□□□ 0.85
FOXA1P55317 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA1P55317 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXA1P55317 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 AC055733.4-201ENST00000638462 1354 ntBASIC20.38■□□□□ 0.85
FOXA1P55317 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
FOXA1P55317 FEM1AP1-201ENST00000431297 1995 ntBASIC20.38■□□□□ 0.85
FOXA1P55317 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXA1P55317 LINC01521-201ENST00000504184 1943 ntBASIC20.38■□□□□ 0.85
FOXA1P55317 AC099791.1-201ENST00000416440 715 ntBASIC20.38■□□□□ 0.85
FOXA1P55317 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.38■□□□□ 0.85
FOXA1P55317 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXA1P55317 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
FOXA1P55317 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.38■□□□□ 0.85
FOXA1P55317 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
FOXA1P55317 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA1P55317 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXA1P55317 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXA1P55317 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXA1P55317 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 AC096631.2-201ENST00000436136 790 ntBASIC20.37■□□□□ 0.85
FOXA1P55317 PLK5-205ENST00000642079 1969 ntBASIC20.37■□□□□ 0.85
FOXA1P55317 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA1P55317 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms