Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.6■□□□□ 0.89
CDH13P55290 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CDH13P55290 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH13P55290 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CDH13P55290 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH13P55290 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.59■□□□□ 0.89
CDH13P55290 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH13P55290 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH13P55290 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH13P55290 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH13P55290 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH13P55290 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CDH13P55290 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
CDH13P55290 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.58■□□□□ 0.89
CDH13P55290 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.58■□□□□ 0.89
CDH13P55290 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.58■□□□□ 0.89
CDH13P55290 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.58■□□□□ 0.89
CDH13P55290 IGHV3-19-201ENST00000521488 291 ntBASIC20.58■□□□□ 0.89
CDH13P55290 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH13P55290 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH13P55290 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH13P55290 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH13P55290 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.58■□□□□ 0.88
CDH13P55290 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDH13P55290 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CDH13P55290 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH13P55290 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.58■□□□□ 0.88
CDH13P55290 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH13P55290 AC073130.3-201ENST00000624389 2278 ntBASIC20.57■□□□□ 0.88
CDH13P55290 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CDH13P55290 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH13P55290 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CDH13P55290 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 AC096631.2-201ENST00000436136 790 ntBASIC20.57■□□□□ 0.88
CDH13P55290 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
CDH13P55290 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH13P55290 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH13P55290 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH13P55290 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CDH13P55290 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH13P55290 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH13P55290 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
CDH13P55290 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH13P55290 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH13P55290 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.56■□□□□ 0.88
CDH13P55290 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CDH13P55290 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH13P55290 AC008406.3-201ENST00000620001 1374 ntBASIC20.56■□□□□ 0.88
CDH13P55290 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH13P55290 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CDH13P55290 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CDH13P55290 AC099791.1-201ENST00000416440 715 ntBASIC20.55■□□□□ 0.88
CDH13P55290 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CDH13P55290 PBX2P1-201ENST00000493219 1291 ntBASIC20.55■□□□□ 0.88
CDH13P55290 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CDH13P55290 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH13P55290 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH13P55290 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH13P55290 SLC25A24-204ENST00000569674 2357 ntBASIC20.54■□□□□ 0.88
CDH13P55290 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH13P55290 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.54■□□□□ 0.88
CDH13P55290 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH13P55290 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH13P55290 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms