Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.69■■□□□ 1.06
NEK3P51956 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.69■■□□□ 1.06
NEK3P51956 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
NEK3P51956 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.68■■□□□ 1.06
NEK3P51956 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.68■■□□□ 1.06
NEK3P51956 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.68■■□□□ 1.06
NEK3P51956 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.68■■□□□ 1.06
NEK3P51956 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.68■■□□□ 1.06
NEK3P51956 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.68■■□□□ 1.06
NEK3P51956 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.68■■□□□ 1.06
NEK3P51956 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.68■■□□□ 1.06
NEK3P51956 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
NEK3P51956 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.68■■□□□ 1.06
NEK3P51956 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.68■■□□□ 1.06
NEK3P51956 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.68■■□□□ 1.06
NEK3P51956 AC005224.4-201ENST00000583262 1652 ntBASIC21.68■■□□□ 1.06
NEK3P51956 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.68■■□□□ 1.06
NEK3P51956 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NEK3P51956 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.67■■□□□ 1.06
NEK3P51956 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NEK3P51956 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NEK3P51956 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NEK3P51956 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NEK3P51956 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.67■■□□□ 1.06
NEK3P51956 OR7E47P-201ENST00000546390 1422 ntBASIC21.67■■□□□ 1.06
NEK3P51956 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.67■■□□□ 1.06
NEK3P51956 AC079140.4-201ENST00000507448 529 ntBASIC21.67■■□□□ 1.06
NEK3P51956 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.67■■□□□ 1.06
NEK3P51956 AL137784.2-201ENST00000607332 1000 ntBASIC21.67■■□□□ 1.06
NEK3P51956 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.67■■□□□ 1.06
NEK3P51956 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
NEK3P51956 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NEK3P51956 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NEK3P51956 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NEK3P51956 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NEK3P51956 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NEK3P51956 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.66■■□□□ 1.06
NEK3P51956 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.66■■□□□ 1.06
NEK3P51956 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.66■■□□□ 1.06
NEK3P51956 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.65■■□□□ 1.06
NEK3P51956 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NEK3P51956 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NEK3P51956 KRT18P61-201ENST00000585825 1298 ntBASIC21.65■■□□□ 1.06
NEK3P51956 AC092437.1-201ENST00000624794 1048 ntBASIC21.65■■□□□ 1.06
NEK3P51956 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NEK3P51956 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
NEK3P51956 AP004607.4-201ENST00000530158 1459 ntBASIC21.64■■□□□ 1.06
NEK3P51956 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NEK3P51956 AC004854.2-201ENST00000608450 1441 ntBASIC21.64■■□□□ 1.06
NEK3P51956 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NEK3P51956 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.64■■□□□ 1.05
NEK3P51956 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.64■■□□□ 1.05
NEK3P51956 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.64■■□□□ 1.05
NEK3P51956 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.64■■□□□ 1.05
NEK3P51956 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.64■■□□□ 1.05
NEK3P51956 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NEK3P51956 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NEK3P51956 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
NEK3P51956 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NEK3P51956 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.64■■□□□ 1.05
NEK3P51956 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NEK3P51956 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
NEK3P51956 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.63■■□□□ 1.05
NEK3P51956 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NEK3P51956 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NEK3P51956 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.63■■□□□ 1.05
NEK3P51956 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.63■■□□□ 1.05
NEK3P51956 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.63■■□□□ 1.05
NEK3P51956 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NEK3P51956 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NEK3P51956 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.63■■□□□ 1.05
NEK3P51956 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms