Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.74■□□□□ 0.75
RFX3P48380 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFX3P48380 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.74■□□□□ 0.75
RFX3P48380 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.73■□□□□ 0.75
RFX3P48380 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.73■□□□□ 0.75
RFX3P48380 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.73■□□□□ 0.75
RFX3P48380 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.73■□□□□ 0.75
RFX3P48380 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
RFX3P48380 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
RFX3P48380 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
RFX3P48380 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.73■□□□□ 0.75
RFX3P48380 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RFX3P48380 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RFX3P48380 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
RFX3P48380 AC009237.3-201ENST00000393279 1427 ntBASIC19.72■□□□□ 0.75
RFX3P48380 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.72■□□□□ 0.75
RFX3P48380 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.72■□□□□ 0.75
RFX3P48380 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RFX3P48380 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.72■□□□□ 0.75
RFX3P48380 AC104564.3-201ENST00000582367 638 ntBASIC19.72■□□□□ 0.75
RFX3P48380 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.72■□□□□ 0.75
RFX3P48380 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.72■□□□□ 0.75
RFX3P48380 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 AC003102.1-202ENST00000563394 1796 ntBASIC19.72■□□□□ 0.75
RFX3P48380 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
RFX3P48380 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.72■□□□□ 0.75
RFX3P48380 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RFX3P48380 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RFX3P48380 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.71■□□□□ 0.75
RFX3P48380 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RFX3P48380 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RFX3P48380 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RFX3P48380 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RFX3P48380 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RFX3P48380 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.71■□□□□ 0.75
RFX3P48380 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.71■□□□□ 0.75
RFX3P48380 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
RFX3P48380 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RFX3P48380 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.7■□□□□ 0.74
RFX3P48380 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.7■□□□□ 0.74
RFX3P48380 AC005224.4-201ENST00000583262 1652 ntBASIC19.7■□□□□ 0.74
RFX3P48380 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
RFX3P48380 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RFX3P48380 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.69■□□□□ 0.74
RFX3P48380 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.69■□□□□ 0.74
RFX3P48380 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.69■□□□□ 0.74
RFX3P48380 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.69■□□□□ 0.74
RFX3P48380 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RFX3P48380 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.69■□□□□ 0.74
RFX3P48380 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RFX3P48380 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
RFX3P48380 AL137060.1-201ENST00000618151 2648 ntBASIC19.68■□□□□ 0.74
RFX3P48380 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
RFX3P48380 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RFX3P48380 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.68■□□□□ 0.74
RFX3P48380 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.68■□□□□ 0.74
RFX3P48380 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
RFX3P48380 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RFX3P48380 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms