Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 FEM1AP4-201ENST00000443167 1987 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.97■■□□□ 1.11
PTPN9P43378 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.97■■□□□ 1.11
PTPN9P43378 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
PTPN9P43378 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.97■■□□□ 1.11
PTPN9P43378 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.97■■□□□ 1.11
PTPN9P43378 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.97■■□□□ 1.11
PTPN9P43378 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.97■■□□□ 1.11
PTPN9P43378 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTPN9P43378 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
PTPN9P43378 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.97■■□□□ 1.11
PTPN9P43378 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
PTPN9P43378 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.96■■□□□ 1.11
PTPN9P43378 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.96■■□□□ 1.11
PTPN9P43378 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.96■■□□□ 1.11
PTPN9P43378 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
PTPN9P43378 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.96■■□□□ 1.11
PTPN9P43378 AP004607.4-201ENST00000530158 1459 ntBASIC21.96■■□□□ 1.11
PTPN9P43378 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN9P43378 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN9P43378 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN9P43378 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN9P43378 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.95■■□□□ 1.1
PTPN9P43378 AC026271.2-201ENST00000428091 497 ntBASIC21.95■■□□□ 1.1
PTPN9P43378 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN9P43378 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.95■■□□□ 1.1
PTPN9P43378 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN9P43378 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.95■■□□□ 1.1
PTPN9P43378 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PTPN9P43378 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.94■■□□□ 1.1
PTPN9P43378 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 AC034268.1-201ENST00000441047 882 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 AC010141.2-201ENST00000452426 721 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.94■■□□□ 1.1
PTPN9P43378 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.94■■□□□ 1.1
PTPN9P43378 AC087623.3-201ENST00000607047 1098 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 AC104187.1-201ENST00000607510 612 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PTPN9P43378 AL024507.2-201ENST00000606070 2574 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 AC004854.2-201ENST00000608450 1441 ntBASIC21.94■■□□□ 1.1
PTPN9P43378 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN9P43378 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.94■■□□□ 1.1
PTPN9P43378 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
PTPN9P43378 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.93■■□□□ 1.1
PTPN9P43378 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PTPN9P43378 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN9P43378 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 AC061975.6-201ENST00000579045 1553 ntBASIC21.92■■□□□ 1.1
PTPN9P43378 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN9P43378 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.92■■□□□ 1.1
PTPN9P43378 POU5F1P4-201ENST00000413175 1085 ntBASIC21.92■■□□□ 1.1
PTPN9P43378 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.92■■□□□ 1.1
PTPN9P43378 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.92■■□□□ 1.1
PTPN9P43378 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.92■■□□□ 1.1
PTPN9P43378 RARRES2P6-201ENST00000567333 442 ntBASIC21.92■■□□□ 1.1
PTPN9P43378 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.92■■□□□ 1.1
PTPN9P43378 KRT18P61-201ENST00000585825 1298 ntBASIC21.92■■□□□ 1.1
PTPN9P43378 AC008175.2-201ENST00000612840 297 ntBASIC21.92■■□□□ 1.1
PTPN9P43378 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.92■■□□□ 1.1
PTPN9P43378 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.92■■□□□ 1.1
PTPN9P43378 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN9P43378 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN9P43378 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN9P43378 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN9P43378 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms