Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HNF4AP41235 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HNF4AP41235 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HNF4AP41235 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.41■□□□□ 0.86
HNF4AP41235 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.41■□□□□ 0.86
HNF4AP41235 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
HNF4AP41235 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HNF4AP41235 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.41■□□□□ 0.86
HNF4AP41235 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HNF4AP41235 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HNF4AP41235 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HNF4AP41235 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.4■□□□□ 0.86
HNF4AP41235 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HNF4AP41235 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HNF4AP41235 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.4■□□□□ 0.86
HNF4AP41235 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HNF4AP41235 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HNF4AP41235 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.4■□□□□ 0.86
HNF4AP41235 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.4■□□□□ 0.86
HNF4AP41235 AL137060.1-201ENST00000618151 2648 ntBASIC20.4■□□□□ 0.86
HNF4AP41235 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
HNF4AP41235 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.39■□□□□ 0.86
HNF4AP41235 FEM1AP4-201ENST00000443167 1987 ntBASIC20.39■□□□□ 0.86
HNF4AP41235 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HNF4AP41235 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HNF4AP41235 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
HNF4AP41235 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HNF4AP41235 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.39■□□□□ 0.85
HNF4AP41235 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.39■□□□□ 0.85
HNF4AP41235 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HNF4AP41235 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.39■□□□□ 0.85
HNF4AP41235 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HNF4AP41235 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.39■□□□□ 0.85
HNF4AP41235 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HNF4AP41235 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HNF4AP41235 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HNF4AP41235 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.38■□□□□ 0.85
HNF4AP41235 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.38■□□□□ 0.85
HNF4AP41235 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HNF4AP41235 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.38■□□□□ 0.85
HNF4AP41235 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HNF4AP41235 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.37■□□□□ 0.85
HNF4AP41235 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.37■□□□□ 0.85
HNF4AP41235 AC027612.3-201ENST00000413684 1047 ntBASIC20.37■□□□□ 0.85
HNF4AP41235 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.37■□□□□ 0.85
HNF4AP41235 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HNF4AP41235 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HNF4AP41235 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.36■□□□□ 0.85
HNF4AP41235 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.36■□□□□ 0.85
HNF4AP41235 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.36■□□□□ 0.85
HNF4AP41235 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.36■□□□□ 0.85
HNF4AP41235 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.36■□□□□ 0.85
HNF4AP41235 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HNF4AP41235 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms