Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.28■■□□□ 1
HADHAP40939 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
HADHAP40939 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.28■■□□□ 1
HADHAP40939 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
HADHAP40939 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 ZNRF2P3-201ENST00000424200 374 ntBASIC21.28■■□□□ 1
HADHAP40939 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.28■■□□□ 1
HADHAP40939 TPRG1LP1-201ENST00000598702 760 ntBASIC21.28■■□□□ 1
HADHAP40939 MIR6084-201ENST00000622012 110 ntBASIC21.28■■□□□ 1
HADHAP40939 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.28■■□□□ 1
HADHAP40939 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.28■■□□□ 1
HADHAP40939 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.28■■□□□ 1
HADHAP40939 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.27■■□□□ 1
HADHAP40939 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.27■■□□□ 1
HADHAP40939 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
HADHAP40939 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.27■■□□□ 1
HADHAP40939 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.27■■□□□ 1
HADHAP40939 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.27■■□□□ 1
HADHAP40939 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.27■□□□□ 0.99
HADHAP40939 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HADHAP40939 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HADHAP40939 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HADHAP40939 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HADHAP40939 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HADHAP40939 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.26■□□□□ 0.99
HADHAP40939 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.26■□□□□ 0.99
HADHAP40939 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HADHAP40939 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.26■□□□□ 0.99
HADHAP40939 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HADHAP40939 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.25■□□□□ 0.99
HADHAP40939 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.25■□□□□ 0.99
HADHAP40939 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HADHAP40939 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HADHAP40939 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HADHAP40939 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.25■□□□□ 0.99
HADHAP40939 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HADHAP40939 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.25■□□□□ 0.99
HADHAP40939 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
HADHAP40939 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HADHAP40939 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.24■□□□□ 0.99
HADHAP40939 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
HADHAP40939 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.24■□□□□ 0.99
HADHAP40939 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HADHAP40939 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.24■□□□□ 0.99
HADHAP40939 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HADHAP40939 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.23■□□□□ 0.99
HADHAP40939 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.23■□□□□ 0.99
HADHAP40939 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
HADHAP40939 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HADHAP40939 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HADHAP40939 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.23■□□□□ 0.99
HADHAP40939 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
HADHAP40939 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HADHAP40939 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
HADHAP40939 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HADHAP40939 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HADHAP40939 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HADHAP40939 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
HADHAP40939 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
HADHAP40939 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
HADHAP40939 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms