Protein–RNA interactions for Protein: P20807

CAPN3, Calpain-3, humanhuman

Predictions only

Length 821 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3P20807 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CAPN3P20807 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.26■□□□□ 0.83
CAPN3P20807 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CAPN3P20807 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.26■□□□□ 0.83
CAPN3P20807 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CAPN3P20807 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CAPN3P20807 AC024257.2-201ENST00000549699 147 ntBASIC20.26■□□□□ 0.83
CAPN3P20807 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
CAPN3P20807 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.26■□□□□ 0.83
CAPN3P20807 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CAPN3P20807 AL136967.2-201ENST00000623968 743 ntBASIC20.26■□□□□ 0.83
CAPN3P20807 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CAPN3P20807 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CAPN3P20807 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CAPN3P20807 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CAPN3P20807 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CAPN3P20807 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CAPN3P20807 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.24■□□□□ 0.83
CAPN3P20807 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.24■□□□□ 0.83
CAPN3P20807 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 DUX4L19-201ENST00000557448 1267 ntBASIC20.24■□□□□ 0.83
CAPN3P20807 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CAPN3P20807 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.24■□□□□ 0.83
CAPN3P20807 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CAPN3P20807 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CAPN3P20807 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CAPN3P20807 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
CAPN3P20807 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.23■□□□□ 0.83
CAPN3P20807 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CAPN3P20807 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CAPN3P20807 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.23■□□□□ 0.83
CAPN3P20807 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.23■□□□□ 0.83
CAPN3P20807 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.23■□□□□ 0.83
CAPN3P20807 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CAPN3P20807 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 AL162430.1-201ENST00000480705 870 ntBASIC20.22■□□□□ 0.83
CAPN3P20807 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CAPN3P20807 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CAPN3P20807 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CAPN3P20807 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CAPN3P20807 AC092667.1-201ENST00000434301 2586 ntBASIC20.21■□□□□ 0.83
CAPN3P20807 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CAPN3P20807 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 AL034346.1-201ENST00000568244 1277 ntBASIC20.21■□□□□ 0.83
CAPN3P20807 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.21■□□□□ 0.83
CAPN3P20807 AP004607.7-201ENST00000527152 1677 ntBASIC20.21■□□□□ 0.83
CAPN3P20807 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.21■□□□□ 0.83
CAPN3P20807 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CAPN3P20807 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.21■□□□□ 0.83
CAPN3P20807 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CAPN3P20807 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 AC091305.1-201ENST00000479476 895 ntBASIC20.2■□□□□ 0.82
CAPN3P20807 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 AF213884.3-201ENST00000563833 479 ntBASIC20.2■□□□□ 0.82
CAPN3P20807 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.2■□□□□ 0.82
CAPN3P20807 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.2■□□□□ 0.82
CAPN3P20807 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CAPN3P20807 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms