Protein–RNA interactions for Protein: P20393

NR1D1, Nuclear receptor subfamily 1 group D member 1, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1D1P20393 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NR1D1P20393 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
NR1D1P20393 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
NR1D1P20393 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.67■■□□□ 1.06
NR1D1P20393 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
NR1D1P20393 GABARAPL3-202ENST00000624044 1851 ntBASIC21.66■■□□□ 1.06
NR1D1P20393 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
NR1D1P20393 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.66■■□□□ 1.06
NR1D1P20393 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.66■■□□□ 1.06
NR1D1P20393 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.66■■□□□ 1.06
NR1D1P20393 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.66■■□□□ 1.06
NR1D1P20393 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
NR1D1P20393 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 AC142381.2-201ENST00000566120 298 ntBASIC21.66■■□□□ 1.06
NR1D1P20393 AC104564.3-201ENST00000582367 638 ntBASIC21.66■■□□□ 1.06
NR1D1P20393 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.66■■□□□ 1.06
NR1D1P20393 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NR1D1P20393 AC004687.1-201ENST00000579003 1625 ntBASIC21.66■■□□□ 1.06
NR1D1P20393 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.66■■□□□ 1.06
NR1D1P20393 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NR1D1P20393 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NR1D1P20393 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 AC106739.1-201ENST00000617035 715 ntBASIC21.65■■□□□ 1.06
NR1D1P20393 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.65■■□□□ 1.06
NR1D1P20393 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NR1D1P20393 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NR1D1P20393 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NR1D1P20393 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.65■■□□□ 1.06
NR1D1P20393 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NR1D1P20393 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.64■■□□□ 1.06
NR1D1P20393 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.64■■□□□ 1.06
NR1D1P20393 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NR1D1P20393 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NR1D1P20393 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.64■■□□□ 1.06
NR1D1P20393 AFG3L1P-217ENST00000557444 2447 ntBASIC21.64■■□□□ 1.05
NR1D1P20393 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.64■■□□□ 1.05
NR1D1P20393 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.64■■□□□ 1.05
NR1D1P20393 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.64■■□□□ 1.05
NR1D1P20393 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NR1D1P20393 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
NR1D1P20393 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.63■■□□□ 1.05
NR1D1P20393 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.63■■□□□ 1.05
NR1D1P20393 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.63■■□□□ 1.05
NR1D1P20393 DUX4L4-201ENST00000566884 1269 ntBASIC21.63■■□□□ 1.05
NR1D1P20393 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.63■■□□□ 1.05
NR1D1P20393 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 AP005212.1-201ENST00000581547 1997 ntBASIC21.63■■□□□ 1.05
NR1D1P20393 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NR1D1P20393 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
NR1D1P20393 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
NR1D1P20393 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 AL049796.1-201ENST00000565336 1766 ntBASIC21.62■■□□□ 1.05
NR1D1P20393 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.62■■□□□ 1.05
NR1D1P20393 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.62■■□□□ 1.05
NR1D1P20393 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.62■■□□□ 1.05
NR1D1P20393 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.62■■□□□ 1.05
NR1D1P20393 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1D1P20393 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.62■■□□□ 1.05
NR1D1P20393 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.62■■□□□ 1.05
NR1D1P20393 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.61■■□□□ 1.05
NR1D1P20393 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 UNC93B3-201ENST00000308076 687 ntBASIC21.61■■□□□ 1.05
NR1D1P20393 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.61■■□□□ 1.05
NR1D1P20393 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.61■■□□□ 1.05
NR1D1P20393 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NR1D1P20393 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1D1P20393 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms