Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.73■□□□□ 0.43
CD74P04233 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.73■□□□□ 0.43
CD74P04233 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.73■□□□□ 0.43
CD74P04233 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CD74P04233 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CD74P04233 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CD74P04233 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CD74P04233 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CD74P04233 YBX1P4-201ENST00000392794 808 ntBASIC17.73■□□□□ 0.43
CD74P04233 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CD74P04233 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC17.73■□□□□ 0.43
CD74P04233 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.73■□□□□ 0.43
CD74P04233 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CD74P04233 AC027702.1-201ENST00000563810 1770 ntBASIC17.73■□□□□ 0.43
CD74P04233 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.73■□□□□ 0.43
CD74P04233 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CD74P04233 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CD74P04233 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CD74P04233 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CD74P04233 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 GUK1-208ENST00000366728 842 ntTSL 2 BASIC17.72■□□□□ 0.43
CD74P04233 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC17.72■□□□□ 0.43
CD74P04233 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.72■□□□□ 0.43
CD74P04233 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.72■□□□□ 0.43
CD74P04233 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.72■□□□□ 0.43
CD74P04233 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.72■□□□□ 0.43
CD74P04233 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CD74P04233 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.71■□□□□ 0.43
CD74P04233 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.71■□□□□ 0.43
CD74P04233 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.71■□□□□ 0.43
CD74P04233 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 AL031848.2-201ENST00000607670 837 ntBASIC17.71■□□□□ 0.43
CD74P04233 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CD74P04233 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.71■□□□□ 0.43
CD74P04233 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CD74P04233 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.71■□□□□ 0.43
CD74P04233 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CD74P04233 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CD74P04233 AC020907.5-201ENST00000624372 1936 ntBASIC17.7■□□□□ 0.42
CD74P04233 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.7■□□□□ 0.42
CD74P04233 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CD74P04233 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.7■□□□□ 0.42
CD74P04233 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CD74P04233 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.7■□□□□ 0.42
CD74P04233 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 BX664725.1-201ENST00000438252 379 ntBASIC17.7■□□□□ 0.42
CD74P04233 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.7■□□□□ 0.42
CD74P04233 AC092028.1-203ENST00000608262 953 ntBASIC17.7■□□□□ 0.42
CD74P04233 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CD74P04233 AC241377.3-202ENST00000626088 1088 ntBASIC17.7■□□□□ 0.42
CD74P04233 AC241585.3-202ENST00000628937 1088 ntBASIC17.7■□□□□ 0.42
CD74P04233 AC245100.8-202ENST00000629247 1058 ntBASIC17.7■□□□□ 0.42
CD74P04233 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CD74P04233 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CD74P04233 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.69■□□□□ 0.42
CD74P04233 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.69■□□□□ 0.42
CD74P04233 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CD74P04233 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.69■□□□□ 0.42
CD74P04233 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 HES6-204ENST00000409182 863 ntTSL 2 BASIC17.69■□□□□ 0.42
CD74P04233 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC17.69■□□□□ 0.42
CD74P04233 AC087239.1-201ENST00000622671 572 ntBASIC17.69■□□□□ 0.42
CD74P04233 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.69■□□□□ 0.42
CD74P04233 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CD74P04233 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms