Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL1A1P02452 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC25.6■■□□□ 1.69
COL1A1P02452 AC008175.2-201ENST00000612840 297 ntBASIC25.6■■□□□ 1.69
COL1A1P02452 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
COL1A1P02452 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC25.59■■□□□ 1.69
COL1A1P02452 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
COL1A1P02452 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL1A1P02452 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL1A1P02452 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL1A1P02452 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC25.59■■□□□ 1.69
COL1A1P02452 POU5F1P4-201ENST00000413175 1085 ntBASIC25.59■■□□□ 1.69
COL1A1P02452 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL1A1P02452 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.58■■□□□ 1.69
COL1A1P02452 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.69
COL1A1P02452 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 POU5F1P3-201ENST00000428824 1078 ntBASIC25.58■■□□□ 1.69
COL1A1P02452 AC093827.2-201ENST00000512654 315 ntBASIC25.58■■□□□ 1.69
COL1A1P02452 MIR4758-201ENST00000577688 71 ntBASIC25.58■■□□□ 1.69
COL1A1P02452 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 AC016405.3-201ENST00000607710 860 ntBASIC25.58■■□□□ 1.69
COL1A1P02452 ITM2C-210ENST00000620962 501 ntBASIC25.58■■□□□ 1.69
COL1A1P02452 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL1A1P02452 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC25.58■■□□□ 1.68
COL1A1P02452 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
COL1A1P02452 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.68
COL1A1P02452 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC25.58■■□□□ 1.68
COL1A1P02452 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
COL1A1P02452 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
COL1A1P02452 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.57■■□□□ 1.68
COL1A1P02452 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.57■■□□□ 1.68
COL1A1P02452 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 BET1L-204ENST00000410108 637 ntTSL 3 BASIC25.57■■□□□ 1.68
COL1A1P02452 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL1A1P02452 AC068473.5-201ENST00000616428 2072 ntBASIC25.57■■□□□ 1.68
COL1A1P02452 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC25.56■■□□□ 1.68
COL1A1P02452 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.56■■□□□ 1.68
COL1A1P02452 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.56■■□□□ 1.68
COL1A1P02452 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.56■■□□□ 1.68
COL1A1P02452 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC25.56■■□□□ 1.68
COL1A1P02452 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL1A1P02452 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL1A1P02452 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL1A1P02452 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL1A1P02452 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.55■■□□□ 1.68
COL1A1P02452 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
COL1A1P02452 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC25.55■■□□□ 1.68
COL1A1P02452 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL1A1P02452 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
COL1A1P02452 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
COL1A1P02452 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC25.54■■□□□ 1.68
COL1A1P02452 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL1A1P02452 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC25.54■■□□□ 1.68
COL1A1P02452 AC008687.6-201ENST00000596318 630 ntBASIC25.54■■□□□ 1.68
COL1A1P02452 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL1A1P02452 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC25.54■■□□□ 1.68
COL1A1P02452 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC25.54■■□□□ 1.68
COL1A1P02452 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL1A1P02452 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL1A1P02452 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL1A1P02452 C11orf96-202ENST00000528572 1834 ntBASIC25.54■■□□□ 1.68
COL1A1P02452 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
COL1A1P02452 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.54■■□□□ 1.68
COL1A1P02452 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
COL1A1P02452 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.53■■□□□ 1.68
COL1A1P02452 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.53■■□□□ 1.68
COL1A1P02452 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
COL1A1P02452 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.53■■□□□ 1.68
COL1A1P02452 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
COL1A1P02452 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC25.53■■□□□ 1.68
COL1A1P02452 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.53■■□□□ 1.68
COL1A1P02452 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL1A1P02452 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms