Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.02■□□□□ 0.8
CPSF4O95639 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 SMUG1P1-201ENST00000590640 811 ntBASIC20.02■□□□□ 0.8
CPSF4O95639 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CPSF4O95639 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.02■□□□□ 0.8
CPSF4O95639 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
CPSF4O95639 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CPSF4O95639 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CPSF4O95639 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.01■□□□□ 0.79
CPSF4O95639 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.01■□□□□ 0.79
CPSF4O95639 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CPSF4O95639 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 AC233992.3-201ENST00000607491 485 ntBASIC20.01■□□□□ 0.79
CPSF4O95639 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.01■□□□□ 0.79
CPSF4O95639 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CPSF4O95639 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.01■□□□□ 0.79
CPSF4O95639 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CPSF4O95639 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20■□□□□ 0.79
CPSF4O95639 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20■□□□□ 0.79
CPSF4O95639 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20■□□□□ 0.79
CPSF4O95639 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20■□□□□ 0.79
CPSF4O95639 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20■□□□□ 0.79
CPSF4O95639 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20■□□□□ 0.79
CPSF4O95639 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
CPSF4O95639 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CPSF4O95639 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.99■□□□□ 0.79
CPSF4O95639 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CPSF4O95639 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CPSF4O95639 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.99■□□□□ 0.79
CPSF4O95639 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CPSF4O95639 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CPSF4O95639 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CPSF4O95639 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.98■□□□□ 0.79
CPSF4O95639 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.98■□□□□ 0.79
CPSF4O95639 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CPSF4O95639 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CPSF4O95639 AL049796.1-201ENST00000565336 1766 ntBASIC19.98■□□□□ 0.79
CPSF4O95639 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.97■□□□□ 0.79
CPSF4O95639 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
CPSF4O95639 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms