Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC9.55□□□□□ -0.88
USH2AO75445 Six3os1_6.1-201ENST00000620790 196 ntBASIC9.55□□□□□ -0.88
USH2AO75445 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
USH2AO75445 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 MFF-205ENST00000354503 1085 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC9.54□□□□□ -0.88
USH2AO75445 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 SAPCD2P4-201ENST00000424595 1171 ntBASIC9.54□□□□□ -0.88
USH2AO75445 AP000347.1-202ENST00000435868 847 ntBASIC9.54□□□□□ -0.88
USH2AO75445 AC009947.2-201ENST00000444014 672 ntBASIC9.54□□□□□ -0.88
USH2AO75445 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
USH2AO75445 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 UPK3BP1-201ENST00000428678 509 ntBASIC9.54□□□□□ -0.88
USH2AO75445 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC9.54□□□□□ -0.88
USH2AO75445 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
USH2AO75445 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 SERF2-207ENST00000409614 582 ntTSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 NMU-205ENST00000511469 756 ntTSL 3 BASIC9.54□□□□□ -0.88
USH2AO75445 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC9.54□□□□□ -0.88
USH2AO75445 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
USH2AO75445 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC9.54□□□□□ -0.88
USH2AO75445 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC9.53□□□□□ -0.88
USH2AO75445 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC9.53□□□□□ -0.88
USH2AO75445 AP003071.4-201ENST00000562276 1284 ntBASIC9.53□□□□□ -0.88
USH2AO75445 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC9.53□□□□□ -0.88
USH2AO75445 AL121906.2-201ENST00000621597 723 ntBASIC9.53□□□□□ -0.88
USH2AO75445 AC006557.6-201ENST00000623071 864 ntBASIC9.53□□□□□ -0.88
USH2AO75445 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC9.53□□□□□ -0.88
USH2AO75445 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
USH2AO75445 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC9.53□□□□□ -0.88
USH2AO75445 LY6E-205ENST00000519611 635 ntTSL 3 BASIC9.53□□□□□ -0.88
USH2AO75445 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 AC079630.1-202ENST00000618127 1840 ntBASIC9.53□□□□□ -0.88
USH2AO75445 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 AC068587.7-201ENST00000641602 218 ntBASIC9.53□□□□□ -0.88
USH2AO75445 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
USH2AO75445 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC9.53□□□□□ -0.88
USH2AO75445 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC9.53□□□□□ -0.88
USH2AO75445 AP001412.1-201ENST00000608405 714 ntBASIC9.53□□□□□ -0.88
USH2AO75445 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
USH2AO75445 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 MMP23A-201ENST00000234610 1017 ntBASIC9.52□□□□□ -0.88
USH2AO75445 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC9.52□□□□□ -0.88
USH2AO75445 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.88
USH2AO75445 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.88
USH2AO75445 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC9.52□□□□□ -0.88
USH2AO75445 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
USH2AO75445 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
USH2AO75445 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 KRT17P3-201ENST00000420566 1262 ntBASIC9.52□□□□□ -0.89
USH2AO75445 AC087388.1-201ENST00000571370 1112 ntBASIC9.52□□□□□ -0.89
USH2AO75445 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC9.52□□□□□ -0.89
USH2AO75445 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
USH2AO75445 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC9.52□□□□□ -0.89
USH2AO75445 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
USH2AO75445 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC9.52□□□□□ -0.89
USH2AO75445 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms