Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
HMGN4O00479 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGN4O00479 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HMGN4O00479 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGN4O00479 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.63■□□□□ 0.73
HMGN4O00479 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.63■□□□□ 0.73
HMGN4O00479 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGN4O00479 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGN4O00479 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGN4O00479 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGN4O00479 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGN4O00479 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HMGN4O00479 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.62■□□□□ 0.73
HMGN4O00479 SUDS3P1-201ENST00000505831 966 ntBASIC19.62■□□□□ 0.73
HMGN4O00479 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
HMGN4O00479 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGN4O00479 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGN4O00479 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGN4O00479 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.62■□□□□ 0.73
HMGN4O00479 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGN4O00479 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGN4O00479 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGN4O00479 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGN4O00479 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGN4O00479 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGN4O00479 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGN4O00479 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGN4O00479 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGN4O00479 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGN4O00479 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 AL139246.5-201ENST00000606645 996 ntBASIC19.6■□□□□ 0.73
HMGN4O00479 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGN4O00479 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGN4O00479 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGN4O00479 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HMGN4O00479 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGN4O00479 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGN4O00479 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGN4O00479 AC012414.1-201ENST00000556676 535 ntBASIC19.59■□□□□ 0.73
HMGN4O00479 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGN4O00479 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGN4O00479 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGN4O00479 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
HMGN4O00479 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGN4O00479 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.58■□□□□ 0.73
HMGN4O00479 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
HMGN4O00479 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGN4O00479 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGN4O00479 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGN4O00479 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.58■□□□□ 0.73
HMGN4O00479 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGN4O00479 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms