Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 KRT18P20-201ENST00000548986 1279 ntBASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC142086.2-201ENST00000569753 217 ntBASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 AP001160.3-201ENST00000601484 763 ntBASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TMX2-CTNND1H3BSU7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
TMX2-CTNND1H3BSU7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TMX2-CTNND1H3BSU7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
TMX2-CTNND1H3BSU7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC083906.2-201ENST00000511578 360 ntBASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC079089.2-201ENST00000531211 1277 ntBASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 DUX4L16-201ENST00000555130 1264 ntBASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TMX2-CTNND1H3BSU7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 AL034346.1-201ENST00000568244 1277 ntBASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC005181.1-201ENST00000604782 1256 ntBASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 MYCNOS-205ENST00000641950 531 ntBASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
TMX2-CTNND1H3BSU7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 SLC29A4P1-201ENST00000398760 971 ntBASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 UBE2DNL-204ENST00000602536 740 ntBASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
TMX2-CTNND1H3BSU7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 ABHD17AP1-201ENST00000358206 933 ntBASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TSPY6P-201ENST00000448518 926 ntBASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 CD99P1-205ENST00000527459 561 ntBASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TMEM191A-211ENST00000637163 1067 ntBASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TMX2-CTNND1H3BSU7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.6■□□□□ 0.89
TMX2-CTNND1H3BSU7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms