Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4LA6NMK7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 AC133561.4-201ENST00000566112 224 ntBASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CPSF4LA6NMK7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 IGHV3-19-201ENST00000521488 291 ntBASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 AC008764.7-201ENST00000593779 1081 ntBASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 AC008406.3-201ENST00000620001 1374 ntBASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4LA6NMK7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CPSF4LA6NMK7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
CPSF4LA6NMK7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CPSF4LA6NMK7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4LA6NMK7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 AC096631.2-201ENST00000436136 790 ntBASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 AL049796.1-201ENST00000565336 1766 ntBASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4LA6NMK7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4LA6NMK7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms