Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 AC055733.4-201ENST00000638462 1354 ntBASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 PBX2P1-201ENST00000493219 1291 ntBASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TCRBV7S3A2A0A539 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 TSPY26P-201ENST00000476365 1326 ntBASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 AC008406.3-201ENST00000620001 1374 ntBASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TCRBV7S3A2A0A539 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TCRBV7S3A2A0A539 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 LINC01006-201ENST00000333319 2292 ntBASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 AP001330.3-201ENST00000520123 633 ntBASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 AC105233.4-201ENST00000642045 216 ntBASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TCRBV7S3A2A0A539 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 AC106739.1-201ENST00000617035 715 ntBASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.42■■□□□ 1.02
TCRBV7S3A2A0A539 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 PLK5-205ENST00000642079 1969 ntBASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 AC009237.3-201ENST00000393279 1427 ntBASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 AC110285.6-201ENST00000617652 491 ntBASIC21.41■■□□□ 1.02
TCRBV7S3A2A0A539 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms