Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 AC137761.2-201ENST00000561729 223 ntBASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 AC145350.3-201ENST00000569033 163 ntBASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
COL4A3BPQ9Y5P4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A3BPQ9Y5P4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 AC006015.1-201ENST00000429970 570 ntBASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A3BPQ9Y5P4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 AC007375.3-201ENST00000600936 2314 ntBASIC23.65■■□□□ 1.38
COL4A3BPQ9Y5P4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A3BPQ9Y5P4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A3BPQ9Y5P4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.64■■□□□ 1.38
COL4A3BPQ9Y5P4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 AC016769.1-201ENST00000409132 1010 ntBASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 RARRES2P11-201ENST00000635158 484 ntBASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A3BPQ9Y5P4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 AC104187.1-201ENST00000607510 612 ntBASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 AC003102.1-202ENST00000563394 1796 ntBASIC23.63■■□□□ 1.37
COL4A3BPQ9Y5P4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A3BPQ9Y5P4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A3BPQ9Y5P4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms