Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 PKD1P6-201ENST00000343738 4769 ntBASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 AL136162.1-201ENST00000607711 1078 ntBASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHA3Q9Y5H8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 IGHV3-19-201ENST00000521488 291 ntBASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHA3Q9Y5H8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC22.08■■□□□ 1.12
PCDHA3Q9Y5H8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHA3Q9Y5H8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHA3Q9Y5H8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHA3Q9Y5H8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.08■■□□□ 1.12
PCDHA3Q9Y5H8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 AC126544.1-201ENST00000580842 1059 ntBASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHA3Q9Y5H8 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 AC135279.3-201ENST00000610945 1311 ntBASIC22.06■■□□□ 1.12
PCDHA3Q9Y5H8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.05■■□□□ 1.12
PCDHA3Q9Y5H8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 AC009237.3-201ENST00000393279 1427 ntBASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms